Detailed information of deep learning profile BP000532.1

This page shows detailed deep learning-derived predictions and motifs for PAX5 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PAX5
Model ID: BP000532.1
Cell line/tissue: GM12878
Class: Paired box factors
Family: Paired domain only
Best Match(es): MA0014.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q02650  
Source: ENCSR000BHD
Model: BPNet

Contribution weight matrix (CWM)

A [ -1.91e-03 -1.05e-04 -3.76e-04 -3.16e-05 5.21e-02 -4.31e-05 7.29e-04 -5.28e-05 -7.65e-04 -1.46e-03 -1.46e-03 6.17e-03 -1.39e-03 -1.27e-03 3.76e-03 1.65e-03 -9.69e-04 -1.12e-03 ]
C [ 3.29e-03 3.73e-06 -4.56e-05 5.21e-02 -1.24e-05 7.41e-02 4.75e-05 2.83e-02 -5.25e-04 1.40e-02 9.51e-03 9.72e-04 2.97e-03 2.48e-03 1.01e-03 5.27e-03 6.64e-03 9.18e-03 ]
G [ 9.73e-03 6.05e-02 7.57e-06 4.33e-05 1.88e-04 -3.47e-05 8.26e-02 1.90e-02 -5.05e-04 -2.22e-04 1.16e-02 9.01e-03 2.58e-03 1.03e-02 1.58e-02 3.23e-03 -1.31e-04 -1.44e-03 ]
T [ -1.50e-03 6.63e-05 4.32e-02 2.18e-04 -1.34e-04 1.36e-04 -9.80e-06 -5.58e-05 1.72e-02 7.58e-03 -2.48e-03 -1.37e-03 9.40e-03 8.65e-03 -1.60e-03 -5.82e-05 4.37e-03 4.39e-03 ]

Frequency matrix

A [ 2734 426 1306 606 9416 47 374 370 2371 1979 1372 3222 1919 1780 3294 2764 2143 1912 ]
C [ 3850 280 2804 10620 902 12580 33 7725 4162 5335 5690 3830 3490 3435 3188 4579 4862 5162 ]
G [ 4223 11669 1006 741 1963 25 12727 4171 1661 2045 4291 3830 4098 4188 4591 3650 2709 2604 ]
T [ 2367 799 8058 1207 893 522 40 908 4979 3814 1821 2291 3667 3770 2101 2180 3460 3496 ]

1 profiles found for the same TF (PAX5) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000359.1 PAX5 ENCSR000BHJ GM12878 Homo sapiens
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