This page shows detailed deep learning-derived predictions and motifs for CTCF in upper lobe of left lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.
Model details
| Name: | CTCF |
| Model ID: | BP000544.1 |
| Cell line/tissue: | upper lobe of left lung |
| Class: | C2H2 zinc finger factors |
| Family: | More than 3 adjacent zinc fingers |
| Best Match(es): | MA0139.2 |
| Taxon: | Vertebrates |
| Species: | Homo sapiens |
| Data Type: | ChIP-seq |
| Uniprot ID: | P49711 |
| Source: | ENCSR964BKO |
| Model: | BPNet |
| A [ | -6.31e-04 | -2.16e-03 | -2.29e-03 | -3.60e-04 | -4.65e-04 | 4.49e-03 | -2.97e-04 | -1.97e-04 | -1.44e-03 | 1.68e-02 | -1.33e-03 | -3.81e-03 | -3.78e-04 | -2.32e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 1.04e-02 | 3.93e-02 | -2.73e-04 | 8.33e-02 | 1.30e-01 | 3.88e-02 | 5.46e-02 | 1.40e-01 | 4.18e-04 | -1.53e-03 | 1.02e-02 | 4.91e-03 | -1.40e-04 | -1.16e-03 | ] |
| G [ | 1.89e-02 | -2.57e-04 | 6.53e-02 | 3.19e-04 | -4.18e-05 | 5.32e-06 | -7.43e-05 | -2.41e-05 | -1.39e-04 | 1.38e-02 | 5.08e-02 | -4.35e-04 | 1.46e-01 | 7.96e-02 | ] |
| T [ | -2.00e-03 | 8.00e-03 | -1.56e-03 | -8.50e-04 | -6.25e-04 | -2.35e-03 | 1.39e-02 | -2.64e-04 | 5.99e-02 | -4.69e-03 | -1.37e-03 | 2.18e-02 | -4.32e-04 | -1.31e-03 | ] |
| A [ | 3884 | 2064 | 3324 | 2968 | 532 | 12167 | 486 | 137 | 2078 | 12905 | 1062 | 5149 | 1 | 2071 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 11570 | 18420 | 1931 | 30674 | 35630 | 20379 | 23032 | 36671 | 3013 | 3331 | 12895 | 5313 | 2 | 2305 | ] |
| G [ | 17559 | 2593 | 26264 | 2128 | 385 | 2140 | 527 | 73 | 1344 | 15392 | 21143 | 1861 | 37164 | 29630 | ] |
| T [ | 4156 | 14091 | 5649 | 1399 | 621 | 2482 | 13123 | 287 | 30732 | 5540 | 2068 | 24844 | 1 | 3162 | ] |
