Detailed information of deep learning profile BP000562.1

This page shows detailed deep learning-derived predictions and motifs for CTCF in ovary using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000562.1
Cell line/tissue: ovary
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
Best Match(es): MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR934GQS
Model: BPNet

Contribution weight matrix (CWM)

A [ -6.49e-04 -1.26e-03 -1.45e-03 -7.25e-04 -1.98e-04 2.07e-03 -1.45e-04 -1.19e-04 -9.82e-04 8.17e-03 -7.14e-04 -2.43e-03 -1.77e-04 -1.17e-03 ]
C [ 6.54e-03 3.70e-02 -3.59e-04 6.28e-02 9.06e-02 2.50e-02 3.68e-02 8.89e-02 7.29e-05 -1.46e-03 4.67e-03 6.21e-03 -9.39e-05 -7.16e-04 ]
G [ 1.72e-02 -3.91e-04 5.70e-02 -1.11e-04 -1.03e-05 1.22e-04 1.23e-05 -9.54e-06 -8.97e-05 1.06e-02 3.55e-02 -1.18e-04 9.67e-02 5.30e-02 ]
T [ -1.55e-03 4.64e-03 -1.49e-03 -6.02e-04 -3.16e-04 -1.30e-03 9.96e-03 -1.28e-04 4.46e-02 -2.88e-03 -7.20e-04 1.72e-02 -2.91e-04 -1.23e-03 ]

Frequency matrix

A [ 1137 574 1025 1157 112 5644 82 37 571 5209 339 1360 0 763 ]
C [ 4922 7939 320 13175 14769 8250 8720 14943 926 1155 4838 2623 0 792 ]
G [ 7601 565 12099 405 53 555 108 20 525 6438 9331 372 15070 12283 ]
T [ 1410 5993 1626 333 136 621 6160 70 13048 2268 562 10714 0 1232 ]

Alternative motif patterns (AMPs)

438 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000194.1 CTCF ENCSR000DVA fibroblast of lung Homo sapiens
BP000200.1 CTCF ENCSR266CJT spleen Homo sapiens
BP000201.1 CTCF ENCSR773JBP esophagus squamous epithelium Homo sapiens
BP000202.1 CTCF ENCSR000AOO astrocyte Homo sapiens
BP000207.1 CTCF ENCSR074SFL esophagus muscularis mucosa Homo sapiens
BP000209.1 CTCF ENCSR000DND pancreas Homo sapiens
BP000210.1 CTCF ENCSR687APM body of pancreas Homo sapiens
BP000212.1 CTCF ENCSR138FTN heart right ventricle Homo sapiens
BP000217.1 CTCF ENCSR298ZPF gastroesophageal sphincter Homo sapiens
BP000220.1 CTCF ENCSR296JFK heart left ventricle Homo sapiens
Showing 10 profiles of page 1 from 44 pages