Detailed information of deep learning profile BP000564.1

This page shows detailed deep learning-derived predictions and motifs for REST in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000564.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
Best Match(es): MA0138.3 MA0138.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BQP
Model: BPNet

Contribution weight matrix (CWM)

A [ -7.45e-05 2.36e-04 -1.06e-04 0.00e+00 1.16e-05 7.95e-02 -2.49e-05 9.04e-02 7.22e-05 -3.43e-04 1.31e-03 6.45e-04 -5.70e-05 ]
C [ 3.19e-03 1.87e-02 6.84e-04 0.00e+00 0.00e+00 4.62e-05 6.63e-02 1.56e-04 0.00e+00 4.69e-02 -7.39e-05 3.25e-02 3.71e-02 ]
G [ 1.89e-02 -1.68e-04 -1.30e-04 9.85e-02 1.01e-01 -2.28e-05 3.10e-05 0.00e+00 1.01e-01 -1.11e-04 1.14e-02 2.76e-04 -1.08e-04 ]
T [ 5.06e-04 2.81e-03 4.02e-02 0.00e+00 0.00e+00 1.09e-05 -1.82e-05 0.00e+00 0.00e+00 8.08e-04 1.66e-02 -4.24e-04 1.87e-04 ]

Frequency matrix

A [ 514 1223 503 46 70 4008 50 4237 49 480 942 592 422 ]
C [ 2234 1357 518 3 3 147 3671 9 7 2949 94 2646 3027 ]
G [ 1000 617 355 4214 4188 32 396 10 4206 233 1561 775 140 ]
T [ 519 1070 2891 4 6 80 150 11 5 605 1670 254 678 ]

Alternative motif patterns (AMPs)

28 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000032.1 REST ENCSR000BSP MCF-7 Homo sapiens
BP000035.1 REST ENCSR000BTV neural cell Homo sapiens
BP000036.1 REST ENCSR000BUP Panc1 Homo sapiens
BP000037.1 REST ENCSR000BUU Ishikawa Homo sapiens
BP000038.1 REST ENCSR000BVI HCT116 Homo sapiens
BP000063.1 REST ENCSR054JMQ K562 Homo sapiens
BP000075.1 REST ENCSR137ZMQ K562 Homo sapiens
BP000179.1 REST ENCSR893QWP liver Homo sapiens
BP000180.1 REST ENCSR896UBV HEK293 Homo sapiens
BP000343.1 REST ENCSR892DRK A549 Homo sapiens
Showing 10 profiles of page 2 from 3 pages