Detailed information of deep learning profile BP000564.1

This page shows detailed deep learning-derived predictions and motifs for REST in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000564.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
Best Match(es): MA0138.3 MA0138.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BQP
Model: BPNet

Contribution weight matrix (CWM)

A [ -7.45e-05 2.36e-04 -1.06e-04 0.00e+00 1.16e-05 7.95e-02 -2.49e-05 9.04e-02 7.22e-05 -3.43e-04 1.31e-03 6.45e-04 -5.70e-05 ]
C [ 3.19e-03 1.87e-02 6.84e-04 0.00e+00 0.00e+00 4.62e-05 6.63e-02 1.56e-04 0.00e+00 4.69e-02 -7.39e-05 3.25e-02 3.71e-02 ]
G [ 1.89e-02 -1.68e-04 -1.30e-04 9.85e-02 1.01e-01 -2.28e-05 3.10e-05 0.00e+00 1.01e-01 -1.11e-04 1.14e-02 2.76e-04 -1.08e-04 ]
T [ 5.06e-04 2.81e-03 4.02e-02 0.00e+00 0.00e+00 1.09e-05 -1.82e-05 0.00e+00 0.00e+00 8.08e-04 1.66e-02 -4.24e-04 1.87e-04 ]

Frequency matrix

A [ 514 1223 503 46 70 4008 50 4237 49 480 942 592 422 ]
C [ 2234 1357 518 3 3 147 3671 9 7 2949 94 2646 3027 ]
G [ 1000 617 355 4214 4188 32 396 10 4206 233 1561 775 140 ]
T [ 519 1070 2891 4 6 80 150 11 5 605 1670 254 678 ]

Alternative motif patterns (AMPs)

28 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000383.1 REST ENCSR867WPH liver Homo sapiens
BP000442.1 REST ENCSR000BJJ SK-N-SH Homo sapiens
BP000459.1 REST ENCSR000BMN HeLa-S3 Homo sapiens
BP000696.1 REST ENCSR000BJP PFSK-1 Homo sapiens
BP000728.1 REST ENCSR663WAR H1 Homo sapiens
BP000790.1 REST ENCSR000BTF HL-60 Homo sapiens
BP000875.1 REST ENCSR000BOZ SK-N-SH Homo sapiens
BP001141.1 REST ENCSR871KYB GM23338 Homo sapiens
Showing 8 profiles of page 3 from 3 pages