This page shows detailed deep learning-derived predictions and motifs for CTCF in LNCaP clone FGC using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.
Model details
| Name: | CTCF |
| Model ID: | BP000576.1 |
| Cell line/tissue: | LNCaP clone FGC |
| Class: | C2H2 zinc finger factors |
| Family: | More than 3 adjacent zinc fingers |
| Best Match(es): | MA0139.2 |
| Taxon: | Vertebrates |
| Species: | Homo sapiens |
| Data Type: | ChIP-seq |
| Uniprot ID: | P49711 |
| Source: | ENCSR000DMF |
| Model: | BPNet |
| A [ | -1.48e-03 | -4.71e-03 | -3.29e-03 | -6.38e-04 | -8.76e-04 | 7.88e-03 | -8.65e-04 | -5.27e-04 | -2.89e-03 | 2.04e-02 | -2.53e-03 | -6.39e-03 | -1.14e-03 | -3.50e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 1.17e-02 | 6.47e-02 | -5.74e-04 | 1.24e-01 | 1.83e-01 | 5.57e-02 | 8.44e-02 | 1.97e-01 | 9.67e-04 | -1.91e-03 | 1.37e-02 | 7.83e-03 | -6.08e-04 | -2.05e-03 | ] |
| G [ | 4.03e-02 | -2.35e-05 | 1.02e-01 | 7.94e-04 | -7.26e-05 | -1.55e-04 | -2.78e-04 | -1.44e-04 | -2.84e-04 | 1.40e-02 | 5.77e-02 | 7.62e-05 | 1.81e-01 | 8.80e-02 | ] |
| T [ | -3.94e-03 | 1.04e-02 | -4.33e-03 | -2.18e-03 | -1.09e-03 | -6.58e-03 | 1.74e-02 | -6.51e-04 | 7.16e-02 | -6.31e-03 | -2.23e-03 | 2.19e-02 | -1.46e-03 | -2.57e-03 | ] |
| A [ | 4930 | 2266 | 3885 | 3880 | 137 | 16872 | 475 | 3 | 2760 | 16007 | 927 | 6612 | 6 | 2885 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 12664 | 21048 | 1057 | 36878 | 42924 | 22763 | 22173 | 43320 | 3181 | 3333 | 14937 | 4496 | 5 | 2263 | ] |
| G [ | 20980 | 2024 | 31565 | 1457 | 30 | 1188 | 340 | 1 | 1007 | 16663 | 25134 | 1333 | 43297 | 33980 | ] |
| T [ | 4756 | 17991 | 6823 | 1115 | 239 | 2507 | 20343 | 6 | 36382 | 7327 | 2333 | 30890 | 22 | 4202 | ] |
