Detailed information of deep learning profile BP000583.1

This page shows detailed deep learning-derived predictions and motifs for CLOCK in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CLOCK
Model ID: BP000583.1
Cell line/tissue: MCF-7
Class: Basic helix-loop-helix factors (bHLH)
Family: PAS domain factors
Best Match(es): MA0819.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O15516  
Source: ENCSR934JDG
Model: BPNet

Contribution weight matrix (CWM)

A [ 3.38e-04 3.97e-05 2.06e-02 0.00e+00 2.22e-05 -7.38e-05 -4.64e-07 ]
C [ -4.04e-04 2.26e-02 -7.73e-06 2.77e-02 -6.81e-05 1.31e-04 -9.51e-06 ]
G [ 6.44e-04 -5.80e-06 2.77e-05 -7.12e-06 2.53e-02 -4.50e-05 2.13e-02 ]
T [ 2.76e-03 -2.28e-06 -1.68e-05 -1.00e-06 -8.27e-06 1.84e-02 1.07e-04 ]

Frequency matrix

A [ 4534 1755 16682 10 1694 871 495 ]
C [ 4424 18649 1157 20941 615 3322 967 ]
G [ 6205 691 3136 77 18919 1627 18372 ]
T [ 6195 263 384 330 130 15539 1524 ]

2 profiles found for the same TF (CLOCK) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000241.1 CLOCK ENCSR699YFX MCF-7 Homo sapiens
BP000847.1 CLOCK ENCSR228OQM K562 Homo sapiens
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