Detailed information of deep learning profile BP000595.1

This page shows detailed deep learning-derived predictions and motifs for IRF1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: IRF1
Model ID: BP000595.1
Cell line/tissue: HepG2
Class: Tryptophan cluster factors
Family: Interferon-regulatory factors
Best Match(es): MA0050.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P10914  
Source: ENCSR890DSP
Model: BPNet

Contribution weight matrix (CWM)

A [ 1.03e-02 9.17e-03 -1.66e-03 -2.13e-03 -2.02e-04 3.08e-02 3.99e-02 3.79e-02 -8.62e-04 -8.98e-04 -6.98e-05 3.44e-02 3.52e-02 3.13e-02 -4.28e-04 -1.20e-03 ]
C [ 1.59e-04 4.62e-04 1.13e-03 4.54e-03 -1.16e-04 3.22e-06 8.45e-06 2.33e-05 2.78e-03 4.18e-03 -3.22e-06 -2.17e-05 3.82e-06 1.34e-04 5.42e-03 2.49e-03 ]
G [ -1.21e-04 4.36e-05 2.84e-03 -2.73e-04 2.81e-02 4.47e-05 7.71e-06 3.07e-05 1.34e-02 -7.25e-05 3.64e-02 -1.07e-04 0.00e+00 -1.90e-05 1.29e-02 -2.12e-04 ]
T [ -4.77e-04 -8.91e-04 -4.64e-05 1.93e-03 -1.32e-04 -1.33e-05 -1.35e-05 -4.89e-05 -1.69e-04 1.39e-02 5.03e-06 3.22e-06 -7.32e-06 -6.12e-06 -1.69e-04 9.95e-03 ]

Frequency matrix

A [ 565 536 254 227 234 975 1134 1117 237 122 81 1101 1136 1115 85 126 ]
C [ 177 200 283 280 55 24 9 19 302 297 6 8 15 28 387 335 ]
G [ 211 239 387 340 832 146 9 19 567 89 1053 41 6 12 652 99 ]
T [ 208 186 237 314 40 16 9 6 55 653 21 11 4 6 37 601 ]

3 profiles found for the same TF (IRF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000312.1 IRF1 ENCSR000EGL K562 Homo sapiens
BP000418.1 IRF1 ENCSR000EGK K562 Homo sapiens
BP000993.1 IRF1 ENCSR854MCV K562 Homo sapiens
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