Detailed information of deep learning profile BP000621.1

This page shows detailed deep learning-derived predictions and motifs for FOXA1 in T47D using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000621.1
Cell line/tissue: T47D
Class: Fork head/winged helix factors
Family: FOX
Best Match(es): MA0148.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR000BKY
Model: BPNet

Contribution weight matrix (CWM)

A [ 4.56e-03 1.15e-02 4.40e-03 1.59e-03 -9.98e-05 5.88e-02 5.74e-02 7.60e-02 0.00e+00 5.32e-02 ]
C [ -2.30e-04 -6.94e-04 -1.11e-04 -3.66e-05 8.71e-03 5.33e-03 2.22e-03 -8.39e-06 8.23e-02 -1.15e-04 ]
G [ -7.54e-04 6.64e-03 -6.32e-04 5.47e-02 -7.31e-06 -1.60e-06 1.44e-06 -7.86e-06 0.00e+00 -2.44e-05 ]
T [ 1.26e-02 -1.26e-03 9.47e-03 -1.18e-04 6.04e-02 -3.11e-06 -5.96e-05 -6.88e-06 1.33e-04 -4.14e-04 ]

Frequency matrix

A [ 33959 38259 36198 15881 2857 72260 75232 88486 0 79291 ]
C [ 11100 14619 4123 2060 18944 16846 12191 282 90760 2432 ]
G [ 8307 24538 16104 67292 1320 621 791 1506 1 1647 ]
T [ 37417 13366 34358 5550 67662 1056 2569 509 22 7413 ]

Alternative motif patterns (AMPs)

11 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000233.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens
BP000287.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens
BP000429.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens
BP000465.1 FOXA1 ENCSR324RCI liver Homo sapiens
BP000807.1 FOXA1 ENCSR000BRD A549 Homo sapiens
BP000816.1 FOXA1 ENCSR819LHG K562 Homo sapiens
BP000880.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens
BP000958.1 FOXA1 ENCSR735KEY liver Homo sapiens
BP001033.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens
BP001046.1 FOXA1 ENCSR000BPX A549 Homo sapiens
Showing 10 profiles of page 1 from 2 pages