This page shows detailed deep learning-derived predictions and motifs for CTCF in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.
Model details
| Name: | CTCF |
| Model ID: | BP000641.1 |
| Cell line/tissue: | MCF-7 |
| Class: | C2H2 zinc finger factors |
| Family: | More than 3 adjacent zinc fingers |
| Best Match(es): | MA0139.2 |
| Taxon: | Vertebrates |
| Species: | Homo sapiens |
| Data Type: | ChIP-seq |
| Uniprot ID: | P49711 |
| Source: | ENCSR000AHD |
| Model: | BPNet |
| A [ | -8.89e-04 | -2.56e-03 | -1.78e-03 | -1.55e-04 | -5.30e-04 | 5.44e-03 | -4.85e-04 | -2.86e-04 | -1.37e-03 | 1.33e-02 | -1.45e-03 | -3.90e-03 | -6.29e-04 | -1.99e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 8.40e-03 | 3.63e-02 | -4.43e-04 | 7.36e-02 | 1.18e-01 | 3.47e-02 | 5.28e-02 | 1.26e-01 | 8.08e-04 | -1.08e-03 | 9.92e-03 | 3.53e-03 | -2.80e-04 | -1.04e-03 | ] |
| G [ | 2.27e-02 | 5.46e-05 | 6.21e-02 | 9.04e-04 | -2.40e-05 | -1.22e-04 | -1.04e-04 | -5.47e-05 | -1.70e-04 | 1.06e-02 | 3.78e-02 | 2.94e-04 | 1.16e-01 | 5.76e-02 | ] |
| T [ | -2.09e-03 | 5.80e-03 | -2.65e-03 | -1.29e-03 | -6.20e-04 | -3.31e-03 | 1.01e-02 | -2.58e-04 | 4.55e-02 | -3.22e-03 | -1.31e-03 | 1.64e-02 | -9.06e-04 | -1.24e-03 | ] |
| A [ | 9172 | 5193 | 6741 | 6529 | 1181 | 25722 | 924 | 554 | 5722 | 25339 | 2776 | 12290 | 661 | 5021 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 21083 | 30436 | 3332 | 56956 | 67597 | 36800 | 43872 | 69036 | 7100 | 6296 | 25191 | 8306 | 474 | 4832 | ] |
| G [ | 32348 | 5697 | 48966 | 4415 | 445 | 2225 | 603 | 150 | 1729 | 27027 | 37563 | 4007 | 67625 | 53431 | ] |
| T [ | 7954 | 29230 | 11518 | 2657 | 1334 | 5810 | 25158 | 817 | 56006 | 11894 | 5027 | 45954 | 1797 | 7273 | ] |
