Detailed information of deep learning profile BP000642.1

This page shows detailed deep learning-derived predictions and motifs for GATA2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GATA2
Model ID: BP000642.1
Cell line/tissue: K562
Class: Other C4 zinc finger-type factors
Family: C4-GATA-related
Best Match(es): MA0036.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P23769  
Source: ENCSR257RKC
Model: BPNet

Contribution weight matrix (CWM)

A [ -4.97e-04 -8.51e-05 1.89e-04 5.91e-02 -1.34e-06 6.14e-06 8.02e-04 -4.93e-04 -2.82e-04 -1.36e-04 4.22e-06 1.09e-03 6.26e-04 3.22e-04 1.78e-04 1.83e-03 ]
C [ 6.30e-03 1.89e-04 7.83e-06 7.90e-07 0.00e+00 5.34e-02 -2.43e-04 8.10e-04 9.68e-04 5.23e-04 1.13e-03 1.81e-04 1.02e-03 1.69e-03 5.70e-03 6.87e-03 ]
G [ 1.69e-03 -3.16e-04 7.45e-05 9.15e-07 1.39e-06 1.11e-06 2.85e-04 1.45e-03 -1.17e-04 -1.53e-04 3.95e-04 4.27e-04 -8.63e-05 4.31e-04 2.91e-04 3.36e-04 ]
T [ -9.88e-04 1.32e-02 2.64e-02 -2.56e-07 5.56e-02 2.43e-07 9.20e-03 -2.39e-04 1.10e-04 2.78e-04 -7.03e-04 -2.10e-04 5.35e-04 -8.91e-05 -5.59e-04 -3.55e-04 ]

Frequency matrix

A [ 11606 8845 13007 65943 89 80 16886 11224 14502 16643 16082 18351 16449 16390 16197 19580 ]
C [ 23971 15890 5572 41 38 65739 2543 19156 18077 18015 17332 17092 16457 19885 21596 21550 ]
G [ 15109 6254 6540 118 84 56 3192 20576 12162 14036 13814 13929 13753 13259 12573 11259 ]
T [ 15424 35121 40991 8 65899 235 43489 15154 21370 17417 18882 16737 19451 16576 15745 13721 ]

Alternative motif patterns (AMPs)

6 profiles found for the same TF (GATA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000483.1 GATA2 ENCSR000EYB SH-SY5Y Homo sapiens
BP000745.1 GATA2 ENCSR897LDT HepG2 Homo sapiens
BP000755.1 GATA2 ENCSR000EWG K562 Homo sapiens
BP000812.1 GATA2 ENCSR706VOO SK-N-SH Homo sapiens
BP001047.1 GATA2 ENCSR000DKA K562 Homo sapiens
BP001194.1 GATA2 ENCSR000BKM K562 Homo sapiens
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