Detailed information of deep learning profile BP000642.1

This page shows detailed deep learning-derived predictions and motifs for GATA2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GATA2
Model ID: BP000642.1
Cell line/tissue: K562
Class: Other C4 zinc finger-type factors
Family: C4-GATA-related
Best Match(es): MA0036.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P23769  
Source: ENCSR257RKC
Model: BPNet

Contribution weight matrix (CWM)

A [ -3.55e-04 -5.59e-04 -8.91e-05 5.35e-04 -2.10e-04 -7.03e-04 2.78e-04 1.10e-04 -2.39e-04 9.20e-03 2.43e-07 5.56e-02 -2.56e-07 2.64e-02 1.32e-02 -9.88e-04 ]
C [ 3.36e-04 2.91e-04 4.31e-04 -8.63e-05 4.27e-04 3.95e-04 -1.53e-04 -1.17e-04 1.45e-03 2.85e-04 1.11e-06 1.39e-06 9.15e-07 7.45e-05 -3.16e-04 1.69e-03 ]
G [ 6.87e-03 5.70e-03 1.69e-03 1.02e-03 1.81e-04 1.13e-03 5.23e-04 9.68e-04 8.10e-04 -2.43e-04 5.34e-02 0.00e+00 7.90e-07 7.83e-06 1.89e-04 6.30e-03 ]
T [ 1.83e-03 1.78e-04 3.22e-04 6.26e-04 1.09e-03 4.22e-06 -1.36e-04 -2.82e-04 -4.93e-04 8.02e-04 6.14e-06 -1.34e-06 5.91e-02 1.89e-04 -8.51e-05 -4.97e-04 ]

Frequency matrix

A [ 13721 15745 16576 19451 16737 18882 17417 21370 15154 43489 235 65899 8 40991 35121 15424 ]
C [ 11259 12573 13259 13753 13929 13814 14036 12162 20576 3192 56 84 118 6540 6254 15109 ]
G [ 21550 21596 19885 16457 17092 17332 18015 18077 19156 2543 65739 38 41 5572 15890 23971 ]
T [ 19580 16197 16390 16449 18351 16082 16643 14502 11224 16886 80 89 65943 13007 8845 11606 ]

Alternative motif patterns (AMPs)

6 profiles found for the same TF (GATA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000483.1 GATA2 ENCSR000EYB SH-SY5Y Homo sapiens
BP000745.1 GATA2 ENCSR897LDT HepG2 Homo sapiens
BP000755.1 GATA2 ENCSR000EWG K562 Homo sapiens
BP000812.1 GATA2 ENCSR706VOO SK-N-SH Homo sapiens
BP001047.1 GATA2 ENCSR000DKA K562 Homo sapiens
BP001194.1 GATA2 ENCSR000BKM K562 Homo sapiens
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