This page shows detailed deep learning-derived predictions and motifs for CTCF in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.
Model details
| Name: | CTCF |
| Model ID: | BP000643.1 |
| Cell line/tissue: | SK-N-SH |
| Class: | C2H2 zinc finger factors |
| Family: | More than 3 adjacent zinc fingers |
| Best Match(es): | MA0139.2 |
| Taxon: | Vertebrates |
| Species: | Homo sapiens |
| Data Type: | ChIP-seq |
| Uniprot ID: | P49711 |
| Source: | ENCSR000EIC |
| Model: | BPNet |
| A [ | -1.20e-03 | -1.20e-03 | 1.93e-02 | -1.46e-03 | -3.75e-03 | 5.53e-02 | -3.37e-04 | 1.22e-02 | -4.17e-03 | -8.17e-04 | -1.43e-03 | -2.90e-03 | 7.23e-03 | -2.38e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 6.55e-02 | 1.31e-01 | 2.63e-04 | 4.01e-02 | 1.11e-02 | -2.39e-04 | -7.35e-05 | -2.02e-04 | -2.45e-04 | -4.10e-05 | 6.35e-04 | 7.22e-02 | 1.80e-04 | 2.71e-02 | ] |
| G [ | -1.52e-03 | -4.69e-04 | 4.35e-03 | 1.08e-02 | -1.39e-03 | 9.76e-04 | 1.37e-01 | 5.95e-02 | 4.44e-02 | 1.32e-01 | 8.54e-02 | -2.94e-04 | 4.39e-02 | 1.02e-02 | ] |
| T [ | -2.40e-03 | -7.73e-04 | -4.10e-03 | -1.74e-03 | 1.46e-02 | -1.62e-03 | -3.12e-04 | -5.03e-04 | 5.07e-03 | -5.11e-04 | -4.11e-04 | -2.40e-03 | -3.00e-03 | -9.58e-04 | ] |
| A [ | 6773 | 2142 | 39112 | 4664 | 10209 | 49301 | 807 | 22755 | 4862 | 912 | 1820 | 9605 | 24361 | 6237 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 45950 | 58790 | 3986 | 32812 | 24229 | 2213 | 223 | 681 | 2567 | 238 | 2820 | 45185 | 4051 | 31086 | ] |
| G [ | 5353 | 969 | 9686 | 22742 | 6405 | 6450 | 61184 | 38470 | 34552 | 60830 | 53071 | 2350 | 30605 | 18535 | ] |
| T [ | 4607 | 783 | 9900 | 2466 | 21841 | 4720 | 470 | 778 | 20703 | 704 | 4973 | 5545 | 3667 | 6826 | ] |
