Detailed information of deep learning profile BP000704.1

This page shows detailed deep learning-derived predictions and motifs for FOXA2 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA2
Model ID: BP000704.1
Cell line/tissue: liver
Class: Fork head/winged helix factors
Family: FOX
Best Match(es): MA0047.3 MA0032.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9Y261  
Source: ENCSR310NYI
Model: BPNet

Contribution weight matrix (CWM)

A [ -1.31e-04 1.07e-02 -1.60e-05 -4.69e-05 -2.90e-06 5.28e-02 -1.92e-05 5.54e-03 -1.26e-03 9.11e-03 ]
C [ -3.11e-05 -2.77e-05 -1.39e-05 5.80e-06 4.81e-06 2.17e-06 3.58e-02 1.80e-04 3.29e-03 -5.96e-04 ]
G [ -5.63e-05 3.22e-02 1.04e-06 1.24e-03 8.08e-03 1.61e-05 -1.51e-05 -1.09e-04 -9.09e-04 -4.38e-04 ]
T [ 3.76e-02 4.45e-07 5.43e-02 4.41e-02 3.20e-02 -1.08e-05 1.41e-03 5.29e-03 1.02e-02 4.58e-03 ]

Frequency matrix

A [ 2492 11256 382 247 704 36047 1627 13235 5579 15353 ]
C [ 888 244 167 308 532 193 28113 7529 9382 2934 ]
G [ 946 25129 142 3833 10582 581 353 713 5435 4564 ]
T [ 32623 321 36259 32562 25132 129 6857 15473 16554 14099 ]

5 profiles found for the same TF (FOXA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000298.1 FOXA2 ENCSR066EBK HepG2 Homo sapiens
BP000787.1 FOXA2 ENCSR080XEY liver Homo sapiens
BP000906.1 FOXA2 ENCSR000BNI HepG2 Homo sapiens
BP001055.1 FOXA2 ENCSR490AMH HepG2 Homo sapiens
BP001115.1 FOXA2 ENCSR000BRE A549 Homo sapiens
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