Detailed information of deep learning profile BP000704.1

This page shows detailed deep learning-derived predictions and motifs for FOXA2 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA2
Model ID: BP000704.1
Cell line/tissue: liver
Class: Fork head/winged helix factors
Family: FOX
Best Match(es): MA0047.3 MA0032.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9Y261  
Source: ENCSR310NYI
Model: BPNet

Contribution weight matrix (CWM)

A [ 4.58e-03 1.02e-02 5.29e-03 1.41e-03 -1.08e-05 3.20e-02 4.41e-02 5.43e-02 4.45e-07 3.76e-02 ]
C [ -4.38e-04 -9.09e-04 -1.09e-04 -1.51e-05 1.61e-05 8.08e-03 1.24e-03 1.04e-06 3.22e-02 -5.63e-05 ]
G [ -5.96e-04 3.29e-03 1.80e-04 3.58e-02 2.17e-06 4.81e-06 5.80e-06 -1.39e-05 -2.77e-05 -3.11e-05 ]
T [ 9.11e-03 -1.26e-03 5.54e-03 -1.92e-05 5.28e-02 -2.90e-06 -4.69e-05 -1.60e-05 1.07e-02 -1.31e-04 ]

Frequency matrix

A [ 14099 16554 15473 6857 129 25132 32562 36259 321 32623 ]
C [ 4564 5435 713 353 581 10582 3833 142 25129 946 ]
G [ 2934 9382 7529 28113 193 532 308 167 244 888 ]
T [ 15353 5579 13235 1627 36047 704 247 382 11256 2492 ]

5 profiles found for the same TF (FOXA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000298.1 FOXA2 ENCSR066EBK HepG2 Homo sapiens
BP000787.1 FOXA2 ENCSR080XEY liver Homo sapiens
BP000906.1 FOXA2 ENCSR000BNI HepG2 Homo sapiens
BP001055.1 FOXA2 ENCSR490AMH HepG2 Homo sapiens
BP001115.1 FOXA2 ENCSR000BRE A549 Homo sapiens
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