Detailed information of deep learning profile BP000737.1

This page shows detailed deep learning-derived predictions and motifs for RFX3 in HepG2 using a single trained BPNet model.

Model details

Name: RFX3
Model ID: BP000737.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: RFX-related factors
Best Match(es): MA0798.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P48380  
Source: ENCSR633OVO
Model: BPNet

Contribution weight matrix (CWM)

A [ 6.41e-05 -1.03e-03 -2.40e-04 1.29e-03 -1.22e-04 4.48e-05 2.85e-02 1.13e-04 1.04e-02 2.01e-03 -1.58e-03 5.20e-02 9.37e-02 1.85e-05 ]
C [ -2.38e-04 -3.10e-04 8.53e-03 4.62e-04 6.87e-02 7.65e-02 -1.27e-03 -1.12e-03 -4.46e-06 -4.95e-05 4.69e-02 -1.36e-04 1.21e-05 1.02e-01 ]
G [ 5.08e-02 6.26e-04 5.02e-04 1.59e-02 6.45e-05 1.17e-05 -7.14e-04 -8.31e-04 6.68e-02 8.25e-02 -5.90e-04 2.05e-03 -3.37e-04 -5.26e-06 ]
T [ 1.44e-03 5.28e-02 1.58e-02 -3.96e-03 1.88e-03 2.51e-03 3.89e-04 4.54e-02 5.47e-07 -1.91e-05 1.88e-03 2.53e-04 -3.09e-06 4.47e-05 ]

Frequency matrix

A [ 804 303 588 947 49 36 3065 488 948 406 756 3843 4791 16 ]
C [ 272 535 1543 675 4362 4408 740 270 18 20 3290 41 16 4791 ]
G [ 3470 364 376 1935 62 20 343 397 3908 4450 167 690 82 4 ]
T [ 348 3692 2387 1337 421 430 746 3739 20 18 681 320 5 83 ]