This page shows detailed deep learning-derived predictions and motifs for CTCF in LNCAP using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.
Model details
| Name: | CTCF |
| Model ID: | BP000740.1 |
| Cell line/tissue: | LNCAP |
| Class: | C2H2 zinc finger factors |
| Family: | More than 3 adjacent zinc fingers |
| Best Match(es): | MA0139.2 |
| Taxon: | Vertebrates |
| Species: | Homo sapiens |
| Data Type: | ChIP-seq |
| Uniprot ID: | P49711 |
| Source: | ENCSR673WZL |
| Model: | BPNet |
| A [ | -1.61e-03 | -5.52e-04 | 2.82e-02 | -1.74e-03 | -4.93e-03 | 7.71e-02 | -3.68e-04 | 2.14e-02 | -3.29e-03 | -6.04e-04 | -1.03e-03 | -2.45e-03 | 1.03e-02 | -3.10e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 8.42e-02 | 1.69e-01 | -4.53e-04 | 5.91e-02 | 1.41e-02 | -2.94e-04 | -6.45e-05 | -1.75e-04 | -2.60e-04 | -7.28e-05 | -5.43e-04 | 9.26e-02 | -9.02e-04 | 3.23e-02 | ] |
| G [ | -1.72e-03 | -2.57e-04 | 5.55e-03 | 1.20e-02 | -2.02e-03 | 2.76e-04 | 1.76e-01 | 6.48e-02 | 4.90e-02 | 1.64e-01 | 1.11e-01 | -9.11e-04 | 5.49e-02 | 1.13e-02 | ] |
| T [ | -2.88e-03 | -4.91e-04 | -4.59e-03 | -1.91e-03 | 1.90e-02 | -2.06e-03 | -2.46e-04 | -4.58e-04 | 7.77e-03 | -3.86e-04 | -3.51e-04 | -2.91e-03 | -3.05e-03 | -1.04e-03 | ] |
| A [ | 3689 | 114 | 25840 | 2172 | 5760 | 30593 | 251 | 15018 | 1970 | 442 | 628 | 4844 | 15661 | 3547 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 27536 | 35862 | 1323 | 19984 | 14080 | 905 | 51 | 220 | 1180 | 76 | 589 | 27400 | 1247 | 18291 | ] |
| G [ | 2244 | 35 | 4231 | 12739 | 2746 | 2506 | 35615 | 20546 | 18500 | 35205 | 32083 | 753 | 17448 | 10862 | ] |
| T [ | 2582 | 39 | 4656 | 1155 | 13464 | 2046 | 133 | 266 | 14399 | 327 | 2750 | 3053 | 1695 | 3349 | ] |
