Detailed information of deep learning profile BP000755.1

This page shows detailed deep learning-derived predictions and motifs for GATA2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GATA2
Model ID: BP000755.1
Cell line/tissue: K562
Class: Other C4 zinc finger-type factors
Family: C4-GATA-related
Best Match(es): MA0036.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P23769  
Source: ENCSR000EWG
Model: BPNet

Contribution weight matrix (CWM)

A [ -1.16e-03 -1.78e-03 -1.07e-03 -9.42e-04 -1.56e-03 -2.67e-03 -1.08e-03 -1.28e-03 -1.54e-03 1.18e-02 0.00e+00 8.99e-02 0.00e+00 4.46e-02 2.15e-02 -2.55e-03 ]
C [ 8.74e-04 1.85e-03 1.60e-03 1.35e-03 1.75e-03 2.10e-03 1.53e-03 6.11e-04 4.46e-03 6.24e-04 1.31e-06 9.96e-07 -4.57e-07 1.17e-04 -3.12e-04 4.99e-03 ]
G [ 1.25e-02 9.92e-03 4.28e-03 2.72e-03 2.35e-03 3.45e-03 2.45e-03 2.73e-03 4.15e-03 -4.49e-04 1.04e-01 0.00e+00 3.12e-06 1.35e-05 8.49e-04 1.15e-02 ]
T [ 2.14e-03 -3.87e-04 -8.03e-04 -4.08e-05 -1.44e-04 -1.16e-03 -1.57e-03 -1.02e-03 -1.65e-03 2.00e-03 -3.55e-08 -2.53e-06 1.01e-01 4.88e-05 -1.68e-04 -1.16e-03 ]

Frequency matrix

A [ 8381 9017 10591 11762 10431 11420 10628 13036 9558 27497 0 43625 2 30187 25499 8892 ]
C [ 7648 9140 9295 10045 10228 9702 10211 8343 14470 2228 4 81 67 3541 3249 10807 ]
G [ 15339 15048 13336 11548 12363 12415 11709 12993 13539 1531 43826 33 10 2731 9779 17709 ]
T [ 12470 10633 10617 10483 10817 10302 11292 9467 6272 12582 9 100 43760 7381 5312 6431 ]

Alternative motif patterns (AMPs)

6 profiles found for the same TF (GATA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000483.1 GATA2 ENCSR000EYB SH-SY5Y Homo sapiens
BP000642.1 GATA2 ENCSR257RKC K562 Homo sapiens
BP000745.1 GATA2 ENCSR897LDT HepG2 Homo sapiens
BP000812.1 GATA2 ENCSR706VOO SK-N-SH Homo sapiens
BP001047.1 GATA2 ENCSR000DKA K562 Homo sapiens
BP001194.1 GATA2 ENCSR000BKM K562 Homo sapiens
Showing 6 profiles of page 1 from 1 pages
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