This page shows detailed deep learning-derived predictions and motifs for CTCF in retinal pigment epithelial cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.
Model details
| Name: | CTCF |
| Model ID: | BP000774.1 |
| Cell line/tissue: | retinal pigment epithelial cell |
| Class: | C2H2 zinc finger factors |
| Family: | More than 3 adjacent zinc fingers |
| Best Match(es): | MA0139.2 |
| Taxon: | Vertebrates |
| Species: | Homo sapiens |
| Data Type: | ChIP-seq |
| Uniprot ID: | P49711 |
| Source: | ENCSR000DVI |
| Model: | BPNet |
| A [ | -2.23e-03 | -1.54e-03 | 1.92e-02 | -1.57e-03 | -4.08e-03 | 6.98e-02 | -4.03e-04 | 8.76e-03 | -5.47e-03 | -1.14e-03 | -2.14e-03 | -2.80e-03 | 5.66e-03 | -2.65e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 8.65e-02 | 1.52e-01 | 2.81e-04 | 5.03e-02 | 1.45e-02 | -3.80e-04 | -9.92e-05 | -1.56e-04 | -3.79e-04 | -9.28e-06 | 2.24e-03 | 6.50e-02 | 9.02e-04 | 2.61e-02 | ] |
| G [ | -1.53e-03 | -5.40e-04 | 6.63e-03 | 1.17e-02 | -1.74e-03 | 1.40e-03 | 1.59e-01 | 7.66e-02 | 5.53e-02 | 1.44e-01 | 8.84e-02 | 7.27e-04 | 4.60e-02 | 7.98e-03 | ] |
| T [ | -2.56e-03 | -9.96e-04 | -5.23e-03 | -2.21e-03 | 1.61e-02 | -2.21e-03 | -3.74e-04 | -7.91e-04 | 1.43e-03 | -9.52e-04 | -1.05e-03 | -2.85e-03 | -3.41e-03 | -7.80e-04 | ] |
| A [ | 6439 | 2318 | 39372 | 4763 | 10111 | 51524 | 603 | 22300 | 5207 | 249 | 1987 | 11181 | 23673 | 7014 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 47598 | 59449 | 3770 | 33053 | 25044 | 1716 | 133 | 544 | 2126 | 39 | 3459 | 43305 | 4451 | 30260 | ] |
| G [ | 4694 | 683 | 9381 | 22934 | 5795 | 5594 | 61980 | 39332 | 35924 | 62678 | 52763 | 2830 | 30789 | 18479 | ] |
| T [ | 4352 | 633 | 10559 | 2333 | 22133 | 4250 | 367 | 907 | 19826 | 117 | 4874 | 5767 | 4170 | 7330 | ] |