This page shows detailed deep learning-derived predictions and motifs for CTCF in Caco-2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.
Model details
| Name: | CTCF |
| Model ID: | BP000779.1 |
| Cell line/tissue: | Caco-2 |
| Class: | C2H2 zinc finger factors |
| Family: | More than 3 adjacent zinc fingers |
| Best Match(es): | MA0139.2 |
| Taxon: | Vertebrates |
| Species: | Homo sapiens |
| Data Type: | ChIP-seq |
| Uniprot ID: | P49711 |
| Source: | ENCSR000DQN |
| Model: | BPNet |
| A [ | -1.88e-03 | -1.34e-03 | 2.12e-02 | -1.60e-03 | -5.34e-03 | 6.91e-02 | -4.41e-04 | 1.04e-02 | -4.92e-03 | -1.15e-03 | -2.03e-03 | -3.60e-03 | 4.98e-03 | -3.28e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 9.41e-02 | 1.69e-01 | 3.62e-04 | 5.81e-02 | 1.89e-02 | -3.17e-04 | -8.22e-05 | -2.30e-04 | -3.07e-04 | -8.41e-05 | 1.91e-03 | 7.59e-02 | 1.05e-03 | 2.95e-02 | ] |
| G [ | -1.59e-03 | -4.09e-04 | 5.83e-03 | 1.29e-02 | -2.01e-03 | 1.68e-03 | 1.80e-01 | 8.14e-02 | 5.74e-02 | 1.65e-01 | 1.00e-01 | 4.13e-04 | 4.71e-02 | 9.00e-03 | ] |
| T [ | -3.06e-03 | -8.16e-04 | -5.84e-03 | -2.06e-03 | 1.77e-02 | -2.35e-03 | -3.47e-04 | -6.04e-04 | 3.62e-03 | -8.43e-04 | -9.19e-04 | -3.34e-03 | -3.84e-03 | -8.99e-04 | ] |
| A [ | 5774 | 799 | 39529 | 4060 | 9588 | 49490 | 544 | 20575 | 5066 | 1246 | 2872 | 11417 | 22009 | 7297 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 48481 | 61137 | 3964 | 34157 | 25694 | 2002 | 127 | 645 | 2687 | 679 | 4893 | 40783 | 6082 | 29217 | ] |
| G [ | 4293 | 341 | 8448 | 22176 | 5840 | 6312 | 61521 | 40326 | 35181 | 59451 | 49041 | 4132 | 29732 | 17921 | ] |
| T [ | 3977 | 248 | 10584 | 2133 | 21404 | 4721 | 333 | 979 | 19591 | 1149 | 5718 | 6193 | 4701 | 8090 | ] |
