Detailed information of deep learning profile BP000787.1

This page shows detailed deep learning-derived predictions and motifs for FOXA2 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA2
Model ID: BP000787.1
Cell line/tissue: liver
Class: Fork head/winged helix factors
Family: FOX
Best Match(es): MA0047.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9Y261  
Source: ENCSR080XEY
Model: BPNet

Contribution weight matrix (CWM)

A [ 4.97e-03 1.34e-02 6.51e-03 3.47e-03 -1.29e-05 4.64e-02 5.56e-02 8.18e-02 4.27e-07 6.04e-02 ]
C [ -7.65e-04 -1.90e-03 -2.27e-04 -1.56e-05 1.18e-04 9.83e-03 1.79e-03 -6.44e-06 3.84e-02 -9.49e-05 ]
G [ -1.15e-03 3.82e-03 -1.40e-03 4.69e-02 5.21e-06 3.96e-06 -4.15e-06 -3.38e-05 -5.10e-05 -5.50e-05 ]
T [ 1.34e-02 -1.40e-03 1.13e-02 3.78e-05 8.10e-02 -4.57e-07 -7.61e-05 -2.38e-05 1.87e-02 -1.42e-04 ]

Frequency matrix

A [ 21465 25735 24125 12771 80 41042 51283 58652 941 53951 ]
C [ 7834 8931 1405 548 538 16680 6962 260 37476 1250 ]
G [ 5520 15292 11361 42993 135 963 859 344 472 1340 ]
T [ 24999 9859 22927 3507 59065 1133 715 562 20929 3277 ]

Alternative motif patterns (AMPs)

5 profiles found for the same TF (FOXA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000298.1 FOXA2 ENCSR066EBK HepG2 Homo sapiens
BP000704.1 FOXA2 ENCSR310NYI liver Homo sapiens
BP000906.1 FOXA2 ENCSR000BNI HepG2 Homo sapiens
BP001055.1 FOXA2 ENCSR490AMH HepG2 Homo sapiens
BP001115.1 FOXA2 ENCSR000BRE A549 Homo sapiens
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