Detailed information of deep learning profile BP000787.1

This page shows detailed deep learning-derived predictions and motifs for FOXA2 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA2
Model ID: BP000787.1
Cell line/tissue: liver
Class: Fork head/winged helix factors
Family: FOX
Best Match(es): MA0047.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9Y261  
Source: ENCSR080XEY
Model: BPNet

Contribution weight matrix (CWM)

A [ -1.42e-04 1.87e-02 -2.38e-05 -7.61e-05 -4.57e-07 8.10e-02 3.78e-05 1.13e-02 -1.40e-03 1.34e-02 ]
C [ -5.50e-05 -5.10e-05 -3.38e-05 -4.15e-06 3.96e-06 5.21e-06 4.69e-02 -1.40e-03 3.82e-03 -1.15e-03 ]
G [ -9.49e-05 3.84e-02 -6.44e-06 1.79e-03 9.83e-03 1.18e-04 -1.56e-05 -2.27e-04 -1.90e-03 -7.65e-04 ]
T [ 6.04e-02 4.27e-07 8.18e-02 5.56e-02 4.64e-02 -1.29e-05 3.47e-03 6.51e-03 1.34e-02 4.97e-03 ]

Frequency matrix

A [ 3277 20929 562 715 1133 59065 3507 22927 9859 24999 ]
C [ 1340 472 344 859 963 135 42993 11361 15292 5520 ]
G [ 1250 37476 260 6962 16680 538 548 1405 8931 7834 ]
T [ 53951 941 58652 51283 41042 80 12771 24125 25735 21465 ]

Alternative motif patterns (AMPs)

5 profiles found for the same TF (FOXA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000298.1 FOXA2 ENCSR066EBK HepG2 Homo sapiens
BP000704.1 FOXA2 ENCSR310NYI liver Homo sapiens
BP000906.1 FOXA2 ENCSR000BNI HepG2 Homo sapiens
BP001055.1 FOXA2 ENCSR490AMH HepG2 Homo sapiens
BP001115.1 FOXA2 ENCSR000BRE A549 Homo sapiens
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