Detailed information of deep learning profile BP000807.1

This page shows detailed deep learning-derived predictions and motifs for FOXA1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000807.1
Cell line/tissue: A549
Class: Fork head/winged helix factors
Family: FOX
Best Match(es): MA0148.4 MA0148.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR000BRD
Model: BPNet

Contribution weight matrix (CWM)

A [ 5.71e-03 1.46e-02 8.39e-03 1.26e-03 -8.49e-06 6.91e-02 6.92e-02 9.40e-02 0.00e+00 6.81e-02 ]
C [ -6.17e-04 -1.55e-03 -1.20e-04 -5.48e-05 4.69e-05 4.88e-03 1.00e-03 1.90e-06 6.25e-02 -7.27e-05 ]
G [ -8.22e-04 7.77e-03 -1.57e-03 5.84e-02 7.36e-06 -2.06e-06 -4.72e-06 -5.81e-06 -3.09e-05 -5.03e-05 ]
T [ 1.93e-02 -1.33e-03 1.18e-02 5.74e-05 8.81e-02 -3.41e-06 -6.52e-05 6.40e-06 1.45e-02 -3.28e-04 ]

Frequency matrix

A [ 20198 23201 21609 9504 77 40829 45219 50437 77 47139 ]
C [ 4873 6623 1143 671 323 9168 4923 47 32004 757 ]
G [ 3723 13889 8603 37967 50 291 259 96 453 980 ]
T [ 21868 6950 19308 2521 50213 375 262 83 18129 1787 ]

Alternative motif patterns (AMPs)

11 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000233.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens
BP000287.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens
BP000429.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens
BP000465.1 FOXA1 ENCSR324RCI liver Homo sapiens
BP000621.1 FOXA1 ENCSR000BKY T47D Homo sapiens
BP000816.1 FOXA1 ENCSR819LHG K562 Homo sapiens
BP000880.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens
BP000958.1 FOXA1 ENCSR735KEY liver Homo sapiens
BP001033.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens
BP001046.1 FOXA1 ENCSR000BPX A549 Homo sapiens
Showing 10 profiles of page 1 from 2 pages