Detailed information of deep learning profile BP000807.1

This page shows detailed deep learning-derived predictions and motifs for FOXA1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000807.1
Cell line/tissue: A549
Class: Fork head/winged helix factors
Family: FOX
Best Match(es): MA0148.4 MA0148.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR000BRD
Model: BPNet

Contribution weight matrix (CWM)

A [ 5.71e-03 1.46e-02 8.39e-03 1.26e-03 -8.49e-06 6.91e-02 6.92e-02 9.40e-02 0.00e+00 6.81e-02 ]
C [ -6.17e-04 -1.55e-03 -1.20e-04 -5.48e-05 4.69e-05 4.88e-03 1.00e-03 1.90e-06 6.25e-02 -7.27e-05 ]
G [ -8.22e-04 7.77e-03 -1.57e-03 5.84e-02 7.36e-06 -2.06e-06 -4.72e-06 -5.81e-06 -3.09e-05 -5.03e-05 ]
T [ 1.93e-02 -1.33e-03 1.18e-02 5.74e-05 8.81e-02 -3.41e-06 -6.52e-05 6.40e-06 1.45e-02 -3.28e-04 ]

Frequency matrix

A [ 20198 23201 21609 9504 77 40829 45219 50437 77 47139 ]
C [ 4873 6623 1143 671 323 9168 4923 47 32004 757 ]
G [ 3723 13889 8603 37967 50 291 259 96 453 980 ]
T [ 21868 6950 19308 2521 50213 375 262 83 18129 1787 ]

Alternative motif patterns (AMPs)

11 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP001104.1 FOXA1 ENCSR865RXA HepG2 Homo sapiens
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