Detailed information of deep learning profile BP000807.1

This page shows detailed deep learning-derived predictions and motifs for FOXA1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000807.1
Cell line/tissue: A549
Class: Fork head/winged helix factors
Family: FOX
Best Match(es): MA0148.4 MA0148.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR000BRD
Model: BPNet

Contribution weight matrix (CWM)

A [ -3.28e-04 1.45e-02 6.40e-06 -6.52e-05 -3.41e-06 8.81e-02 5.74e-05 1.18e-02 -1.33e-03 1.93e-02 ]
C [ -5.03e-05 -3.09e-05 -5.81e-06 -4.72e-06 -2.06e-06 7.36e-06 5.84e-02 -1.57e-03 7.77e-03 -8.22e-04 ]
G [ -7.27e-05 6.25e-02 1.90e-06 1.00e-03 4.88e-03 4.69e-05 -5.48e-05 -1.20e-04 -1.55e-03 -6.17e-04 ]
T [ 6.81e-02 0.00e+00 9.40e-02 6.92e-02 6.91e-02 -8.49e-06 1.26e-03 8.39e-03 1.46e-02 5.71e-03 ]

Frequency matrix

A [ 1787 18129 83 262 375 50213 2521 19308 6950 21868 ]
C [ 980 453 96 259 291 50 37967 8603 13889 3723 ]
G [ 757 32004 47 4923 9168 323 671 1143 6623 4873 ]
T [ 47139 77 50437 45219 40829 77 9504 21609 23201 20198 ]

Alternative motif patterns (AMPs)

11 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000233.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens
BP000287.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens
BP000429.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens
BP000465.1 FOXA1 ENCSR324RCI liver Homo sapiens
BP000621.1 FOXA1 ENCSR000BKY T47D Homo sapiens
BP000816.1 FOXA1 ENCSR819LHG K562 Homo sapiens
BP000880.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens
BP000958.1 FOXA1 ENCSR735KEY liver Homo sapiens
BP001033.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens
BP001046.1 FOXA1 ENCSR000BPX A549 Homo sapiens
Showing 10 profiles of page 1 from 2 pages