Detailed information of deep learning profile BP000827.1

This page shows detailed deep learning-derived predictions and motifs for GATA3 in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GATA3
Model ID: BP000827.1
Cell line/tissue: MCF-7
Class: Other C4 zinc finger-type factors
Family: C4-GATA-related
Best Match(es): MA0037.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P23772  
Source: ENCSR000BST
Model: BPNet

Contribution weight matrix (CWM)

A [ 1.68e-03 2.38e-02 1.81e-02 2.07e-03 2.78e-03 2.42e-03 -8.76e-05 8.22e-03 -3.72e-04 3.79e-04 -5.28e-04 -3.72e-04 1.01e-03 6.96e-04 7.87e-02 0.00e+00 0.00e+00 8.37e-04 ]
C [ 7.47e-04 1.20e-03 1.86e-03 2.40e-02 1.83e-02 2.74e-03 3.12e-03 1.80e-03 5.71e-04 4.47e-03 4.27e-04 7.71e-03 1.38e-03 1.18e-03 0.00e+00 0.00e+00 7.78e-02 0.00e+00 ]
G [ 1.26e-03 9.88e-04 1.20e-03 1.37e-03 1.41e-03 1.57e-03 5.56e-03 2.32e-04 9.07e-04 1.23e-03 9.68e-04 1.75e-03 -4.28e-04 4.78e-03 0.00e+00 0.00e+00 0.00e+00 3.74e-05 ]
T [ 1.44e-02 9.13e-03 2.33e-02 1.73e-02 5.86e-03 4.46e-03 7.85e-04 -2.62e-05 7.75e-03 -4.36e-04 3.93e-03 -5.12e-05 1.32e-02 1.03e-02 0.00e+00 7.32e-02 0.00e+00 2.23e-02 ]

Frequency matrix

A [ 4191 4916 4612 3621 4051 4371 4145 4008 3670 3350 2208 1879 2006 2905 14427 0 0 2621 ]
C [ 2983 2671 2683 4100 3698 2935 3219 3410 3178 3001 3666 5875 1253 459 0 0 14427 142 ]
G [ 2583 2472 2707 2416 2230 2518 3129 2948 2955 2709 2321 2841 496 1753 0 0 0 245 ]
T [ 4670 4367 4425 4290 4449 4603 3934 4061 4624 5368 6233 3832 10672 9310 0 14427 0 11419 ]

3 profiles found for the same TF (GATA3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000419.1 GATA3 ENCSR000BTH SK-N-SH Homo sapiens
BP000597.1 GATA3 ENCSR423RTK MCF-7 Homo sapiens
BP001107.1 GATA3 ENCSR000BMX T47D Homo sapiens
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