Detailed information of deep learning profile BP000827.1

This page shows detailed deep learning-derived predictions and motifs for GATA3 in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GATA3
Model ID: BP000827.1
Cell line/tissue: MCF-7
Class: Other C4 zinc finger-type factors
Family: C4-GATA-related
Best Match(es): MA0037.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P23772  
Source: ENCSR000BST
Model: BPNet

Contribution weight matrix (CWM)

A [ 2.23e-02 0.00e+00 7.32e-02 0.00e+00 1.03e-02 1.32e-02 -5.12e-05 3.93e-03 -4.36e-04 7.75e-03 -2.62e-05 7.85e-04 4.46e-03 5.86e-03 1.73e-02 2.33e-02 9.13e-03 1.44e-02 ]
C [ 3.74e-05 0.00e+00 0.00e+00 0.00e+00 4.78e-03 -4.28e-04 1.75e-03 9.68e-04 1.23e-03 9.07e-04 2.32e-04 5.56e-03 1.57e-03 1.41e-03 1.37e-03 1.20e-03 9.88e-04 1.26e-03 ]
G [ 0.00e+00 7.78e-02 0.00e+00 0.00e+00 1.18e-03 1.38e-03 7.71e-03 4.27e-04 4.47e-03 5.71e-04 1.80e-03 3.12e-03 2.74e-03 1.83e-02 2.40e-02 1.86e-03 1.20e-03 7.47e-04 ]
T [ 8.37e-04 0.00e+00 0.00e+00 7.87e-02 6.96e-04 1.01e-03 -3.72e-04 -5.28e-04 3.79e-04 -3.72e-04 8.22e-03 -8.76e-05 2.42e-03 2.78e-03 2.07e-03 1.81e-02 2.38e-02 1.68e-03 ]

Frequency matrix

A [ 11419 0 14427 0 9310 10672 3832 6233 5368 4624 4061 3934 4603 4449 4290 4425 4367 4670 ]
C [ 245 0 0 0 1753 496 2841 2321 2709 2955 2948 3129 2518 2230 2416 2707 2472 2583 ]
G [ 142 14427 0 0 459 1253 5875 3666 3001 3178 3410 3219 2935 3698 4100 2683 2671 2983 ]
T [ 2621 0 0 14427 2905 2006 1879 2208 3350 3670 4008 4145 4371 4051 3621 4612 4916 4191 ]

3 profiles found for the same TF (GATA3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000419.1 GATA3 ENCSR000BTH SK-N-SH Homo sapiens
BP000597.1 GATA3 ENCSR423RTK MCF-7 Homo sapiens
BP001107.1 GATA3 ENCSR000BMX T47D Homo sapiens
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