Detailed information of deep learning profile BP000828.1

This page shows detailed deep learning-derived predictions and motifs for RFX1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RFX1
Model ID: BP000828.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: RFX-related factors
Best Match(es): MA0509.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P48743  
Source: ENCSR928API
Model: BPNet

Contribution weight matrix (CWM)

A [ -4.76e-06 -1.99e-05 4.32e-04 2.59e-03 -1.35e-05 -1.70e-05 3.97e-02 -2.12e-04 1.86e-03 2.27e-03 -4.13e-03 1.59e-02 4.76e-02 1.70e-03 ]
C [ -2.69e-06 -1.62e-04 1.79e-03 -3.31e-04 6.78e-02 5.04e-02 -8.23e-04 -2.94e-04 -1.19e-05 9.06e-05 1.55e-02 -8.48e-05 1.22e-04 4.90e-02 ]
G [ 9.49e-02 -1.17e-05 -6.41e-05 4.38e-02 -1.12e-05 1.07e-05 -6.05e-04 -1.18e-03 6.60e-02 5.16e-02 1.56e-03 6.04e-03 -5.74e-04 -6.22e-04 ]
T [ -3.07e-06 8.59e-02 4.20e-02 -1.55e-03 2.33e-03 9.28e-03 7.81e-05 2.36e-02 5.38e-05 -2.57e-04 1.30e-03 1.65e-04 -8.60e-04 -1.79e-04 ]

Frequency matrix

A [ 69 9 811 1556 46 29 6559 1119 806 1117 1861 4249 6217 685 ]
C [ 1 102 891 172 7165 6422 584 472 37 193 3384 644 568 5782 ]
G [ 8147 15 41 5515 46 39 422 1137 7259 6794 1096 2092 919 538 ]
T [ 9 8100 6483 983 969 1736 661 5498 124 122 1886 1241 522 1221 ]

Other motif patterns

4 profiles found for the same TF (RFX1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000205.1 RFX1 ENCSR968GIB K562 Homo sapiens
BP000378.1 RFX1 ENCSR066TET MCF-7 Homo sapiens
BP000994.1 RFX1 ENCSR041AXL K562 Homo sapiens
BP001028.1 RFX1 ENCSR788XNX MCF-7 Homo sapiens
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