Detailed information of deep learning profile BP000828.1

This page shows detailed deep learning-derived predictions and motifs for RFX1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RFX1
Model ID: BP000828.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: RFX-related factors
Best Match(es): MA0509.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P48743  
Source: ENCSR928API
Model: BPNet

Contribution weight matrix (CWM)

A [ -1.79e-04 -8.60e-04 1.65e-04 1.30e-03 -2.57e-04 5.38e-05 2.36e-02 7.81e-05 9.28e-03 2.33e-03 -1.55e-03 4.20e-02 8.59e-02 -3.07e-06 ]
C [ -6.22e-04 -5.74e-04 6.04e-03 1.56e-03 5.16e-02 6.60e-02 -1.18e-03 -6.05e-04 1.07e-05 -1.12e-05 4.38e-02 -6.41e-05 -1.17e-05 9.49e-02 ]
G [ 4.90e-02 1.22e-04 -8.48e-05 1.55e-02 9.06e-05 -1.19e-05 -2.94e-04 -8.23e-04 5.04e-02 6.78e-02 -3.31e-04 1.79e-03 -1.62e-04 -2.69e-06 ]
T [ 1.70e-03 4.76e-02 1.59e-02 -4.13e-03 2.27e-03 1.86e-03 -2.12e-04 3.97e-02 -1.70e-05 -1.35e-05 2.59e-03 4.32e-04 -1.99e-05 -4.76e-06 ]

Frequency matrix

A [ 1221 522 1241 1886 122 124 5498 661 1736 969 983 6483 8100 9 ]
C [ 538 919 2092 1096 6794 7259 1137 422 39 46 5515 41 15 8147 ]
G [ 5782 568 644 3384 193 37 472 584 6422 7165 172 891 102 1 ]
T [ 685 6217 4249 1861 1117 806 1119 6559 29 46 1556 811 9 69 ]

Other motif patterns

4 profiles found for the same TF (RFX1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000205.1 RFX1 ENCSR968GIB K562 Homo sapiens
BP000378.1 RFX1 ENCSR066TET MCF-7 Homo sapiens
BP000994.1 RFX1 ENCSR041AXL K562 Homo sapiens
BP001028.1 RFX1 ENCSR788XNX MCF-7 Homo sapiens
Showing 4 profiles of page 1 from 1 pages
  • 1 (current)