Detailed information of deep learning profile BP000840.1

This page shows detailed deep learning-derived predictions and motifs for GABPA in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000840.1
Cell line/tissue: liver
Class: Tryptophan cluster factors
Family: Ets-related
Best Match(es): MA0062.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR038GMB
Model: BPNet

Contribution weight matrix (CWM)

A [ -1.07e-04 6.30e-04 -7.96e-06 -2.63e-06 7.19e-02 4.86e-02 2.18e-03 -9.20e-04 ]
C [ 2.74e-02 5.43e-02 2.51e-05 2.33e-05 3.59e-05 3.97e-05 -3.99e-05 2.40e-03 ]
G [ 2.61e-04 -3.64e-05 8.96e-02 7.42e-02 1.78e-05 -3.52e-05 2.28e-02 -7.68e-04 ]
T [ -2.44e-04 -6.18e-05 3.59e-07 2.06e-05 -2.88e-07 2.77e-04 -3.17e-05 2.09e-02 ]

Frequency matrix

A [ 7199 16771 58 1354 52843 47712 15264 8550 ]
C [ 34571 37156 42 1828 1763 2978 9097 16161 ]
G [ 13003 2681 58144 53540 2709 2621 29561 10784 ]
T [ 3500 1663 28 1550 958 4961 4350 22777 ]

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000192.1 GABPA ENCSR000BIW H1 Homo sapiens
BP000204.1 GABPA ENCSR350ORK liver Homo sapiens
BP000323.1 GABPA ENCSR269TNX HepG2 Homo sapiens
BP000347.1 GABPA ENCSR331HPA GM12878 Homo sapiens
BP000391.1 GABPA ENCSR038RXU MCF-7 Homo sapiens
BP000406.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens
BP000563.1 GABPA ENCSR000BLO K562 Homo sapiens
BP000582.1 GABPA ENCSR000BUK MCF-7 Homo sapiens
BP000699.1 GABPA ENCSR000BTK HL-60 Homo sapiens
BP000823.1 GABPA ENCSR000BJK HepG2 Homo sapiens
Showing 10 profiles of page 1 from 2 pages