Detailed information of deep learning profile BP000847.1

This page shows detailed deep learning-derived predictions and motifs for CLOCK in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CLOCK
Model ID: BP000847.1
Cell line/tissue: K562
Class: Basic helix-loop-helix factors (bHLH)
Family: PAS domain factors
Best Match(es): MA0819.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O15516  
Source: ENCSR228OQM
Model: BPNet

Contribution weight matrix (CWM)

A [ -7.51e-06 1.49e-02 -3.18e-06 4.30e-05 4.73e-05 1.87e-05 ]
C [ 1.59e-02 -2.04e-05 2.26e-02 -2.00e-06 1.68e-05 -1.44e-05 ]
G [ -5.67e-06 4.10e-04 0.00e+00 2.21e-02 -2.68e-06 1.56e-02 ]
T [ 6.99e-06 -3.61e-05 4.68e-05 4.00e-07 1.82e-02 1.52e-05 ]

Frequency matrix

A [ 277 2692 0 27 64 175 ]
C [ 3617 255 4149 1 275 157 ]
G [ 119 885 0 4126 75 3437 ]
T [ 143 324 7 2 3742 387 ]

2 profiles found for the same TF (CLOCK) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000241.1 CLOCK ENCSR699YFX MCF-7 Homo sapiens
BP000583.1 CLOCK ENCSR934JDG MCF-7 Homo sapiens
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