Detailed information of deep learning profile BP000847.1

This page shows detailed deep learning-derived predictions and motifs for CLOCK in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CLOCK
Model ID: BP000847.1
Cell line/tissue: K562
Class: Basic helix-loop-helix factors (bHLH)
Family: PAS domain factors
Best Match(es): MA0819.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O15516  
Source: ENCSR228OQM
Model: BPNet

Contribution weight matrix (CWM)

A [ 1.52e-05 1.82e-02 4.00e-07 4.68e-05 -3.61e-05 6.99e-06 ]
C [ 1.56e-02 -2.68e-06 2.21e-02 0.00e+00 4.10e-04 -5.67e-06 ]
G [ -1.44e-05 1.68e-05 -2.00e-06 2.26e-02 -2.04e-05 1.59e-02 ]
T [ 1.87e-05 4.73e-05 4.30e-05 -3.18e-06 1.49e-02 -7.51e-06 ]

Frequency matrix

A [ 387 3742 2 7 324 143 ]
C [ 3437 75 4126 0 885 119 ]
G [ 157 275 1 4149 255 3617 ]
T [ 175 64 27 0 2692 277 ]

2 profiles found for the same TF (CLOCK) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000241.1 CLOCK ENCSR699YFX MCF-7 Homo sapiens
BP000583.1 CLOCK ENCSR934JDG MCF-7 Homo sapiens
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