Detailed information of deep learning profile BP000875.1

This page shows detailed deep learning-derived predictions and motifs for REST in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000875.1
Cell line/tissue: SK-N-SH
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
Best Match(es): MA0138.3 MA0138.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BOZ
Model: BPNet

Contribution weight matrix (CWM)

A [ -1.02e-03 -6.39e-04 -3.18e-04 -2.63e-05 3.17e-05 7.32e-02 -3.66e-05 9.57e-02 3.03e-05 -1.60e-03 -3.02e-04 1.37e-04 -1.02e-03 ]
C [ 2.06e-03 2.62e-02 1.44e-03 1.37e-04 1.58e-04 6.82e-04 7.75e-02 2.93e-04 3.38e-05 4.99e-02 -6.76e-05 3.38e-02 3.71e-02 ]
G [ 2.96e-02 2.20e-04 -2.50e-04 1.13e-01 1.21e-01 2.54e-04 -3.32e-05 2.35e-04 1.23e-01 -6.20e-04 1.74e-02 2.88e-03 5.33e-05 ]
T [ -1.17e-03 1.76e-03 3.53e-02 -3.86e-05 1.47e-05 -2.08e-04 -3.85e-05 -8.63e-05 -9.99e-06 1.08e-04 8.77e-03 -1.16e-03 -6.93e-04 ]

Frequency matrix

A [ 1167 1833 825 94 143 7024 157 7729 42 1164 1879 1144 958 ]
C [ 3173 2919 744 12 5 463 6649 12 3 5081 208 4503 5096 ]
G [ 2339 1106 648 7686 7644 26 635 9 7746 512 2858 1571 341 ]
T [ 1116 1937 5578 3 3 282 354 45 4 1038 2850 577 1400 ]

28 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000032.1 REST ENCSR000BSP MCF-7 Homo sapiens
BP000035.1 REST ENCSR000BTV neural cell Homo sapiens
BP000036.1 REST ENCSR000BUP Panc1 Homo sapiens
BP000037.1 REST ENCSR000BUU Ishikawa Homo sapiens
BP000038.1 REST ENCSR000BVI HCT116 Homo sapiens
BP000063.1 REST ENCSR054JMQ K562 Homo sapiens
BP000075.1 REST ENCSR137ZMQ K562 Homo sapiens
BP000179.1 REST ENCSR893QWP liver Homo sapiens
BP000180.1 REST ENCSR896UBV HEK293 Homo sapiens
BP000343.1 REST ENCSR892DRK A549 Homo sapiens
Showing 10 profiles of page 2 from 3 pages