Detailed information of deep learning profile BP000875.1

This page shows detailed deep learning-derived predictions and motifs for REST in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000875.1
Cell line/tissue: SK-N-SH
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
Best Match(es): MA0138.3 MA0138.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BOZ
Model: BPNet

Contribution weight matrix (CWM)

A [ -1.02e-03 -6.39e-04 -3.18e-04 -2.63e-05 3.17e-05 7.32e-02 -3.66e-05 9.57e-02 3.03e-05 -1.60e-03 -3.02e-04 1.37e-04 -1.02e-03 ]
C [ 2.06e-03 2.62e-02 1.44e-03 1.37e-04 1.58e-04 6.82e-04 7.75e-02 2.93e-04 3.38e-05 4.99e-02 -6.76e-05 3.38e-02 3.71e-02 ]
G [ 2.96e-02 2.20e-04 -2.50e-04 1.13e-01 1.21e-01 2.54e-04 -3.32e-05 2.35e-04 1.23e-01 -6.20e-04 1.74e-02 2.88e-03 5.33e-05 ]
T [ -1.17e-03 1.76e-03 3.53e-02 -3.86e-05 1.47e-05 -2.08e-04 -3.85e-05 -8.63e-05 -9.99e-06 1.08e-04 8.77e-03 -1.16e-03 -6.93e-04 ]

Frequency matrix

A [ 1167 1833 825 94 143 7024 157 7729 42 1164 1879 1144 958 ]
C [ 3173 2919 744 12 5 463 6649 12 3 5081 208 4503 5096 ]
G [ 2339 1106 648 7686 7644 26 635 9 7746 512 2858 1571 341 ]
T [ 1116 1937 5578 3 3 282 354 45 4 1038 2850 577 1400 ]

28 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000383.1 REST ENCSR867WPH liver Homo sapiens
BP000442.1 REST ENCSR000BJJ SK-N-SH Homo sapiens
BP000459.1 REST ENCSR000BMN HeLa-S3 Homo sapiens
BP000564.1 REST ENCSR000BQP A549 Homo sapiens
BP000696.1 REST ENCSR000BJP PFSK-1 Homo sapiens
BP000728.1 REST ENCSR663WAR H1 Homo sapiens
BP000790.1 REST ENCSR000BTF HL-60 Homo sapiens
BP001141.1 REST ENCSR871KYB GM23338 Homo sapiens
Showing 8 profiles of page 3 from 3 pages