This page shows detailed deep learning-derived predictions and motifs for CTCF in VCaP using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.
Model details
| Name: | CTCF |
| Model ID: | BP000882.1 |
| Cell line/tissue: | VCaP |
| Class: | C2H2 zinc finger factors |
| Family: | More than 3 adjacent zinc fingers |
| Best Match(es): | MA0139.2 |
| Taxon: | Vertebrates |
| Species: | Homo sapiens |
| Data Type: | ChIP-seq |
| Uniprot ID: | P49711 |
| Source: | ENCSR265ARE |
| Model: | BPNet |
| A [ | -1.83e-03 | -2.57e-04 | 2.46e-02 | -1.97e-03 | -4.09e-03 | 6.39e-02 | -4.15e-04 | 1.37e-02 | -4.42e-03 | -8.63e-04 | -2.05e-03 | -3.39e-03 | 7.35e-03 | -2.99e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 8.06e-02 | 1.61e-01 | -1.81e-04 | 5.21e-02 | 1.59e-02 | -2.47e-04 | -6.03e-05 | -1.87e-04 | -2.36e-04 | -8.51e-05 | 1.06e-03 | 6.88e-02 | 2.85e-04 | 2.57e-02 | ] |
| G [ | -1.66e-03 | -6.08e-05 | 4.21e-03 | 1.25e-02 | -2.17e-03 | 9.30e-04 | 1.51e-01 | 6.60e-02 | 4.49e-02 | 1.42e-01 | 8.72e-02 | -7.15e-05 | 4.21e-02 | 8.94e-03 | ] |
| T [ | -2.58e-03 | -1.51e-04 | -6.15e-03 | -2.09e-03 | 1.61e-02 | -2.07e-03 | -3.35e-04 | -7.12e-04 | 7.10e-03 | -6.60e-04 | -6.50e-04 | -2.49e-03 | -3.36e-03 | -8.68e-04 | ] |
| A [ | 5308 | 2 | 37821 | 3292 | 8999 | 44714 | 91 | 21184 | 3979 | 407 | 2131 | 9685 | 22145 | 6383 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 42462 | 55101 | 2164 | 30134 | 21307 | 1615 | 12 | 454 | 2099 | 85 | 3282 | 37531 | 3891 | 25520 | ] |
| G [ | 3495 | 0 | 6422 | 19789 | 4755 | 4873 | 54953 | 32873 | 28064 | 54274 | 44555 | 2421 | 25293 | 16413 | ] |
| T [ | 3838 | 0 | 8695 | 1888 | 20042 | 3901 | 47 | 592 | 20961 | 337 | 5135 | 5465 | 3774 | 6787 | ] |
