Detailed information of deep learning profile BP000906.1

This page shows detailed deep learning-derived predictions and motifs for FOXA2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA2
Model ID: BP000906.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
Best Match(es): MA0047.3 MA0032.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9Y261  
Source: ENCSR000BNI
Model: BPNet

Contribution weight matrix (CWM)

A [ 5.83e-03 1.22e-02 5.83e-03 1.03e-03 -2.72e-05 5.73e-02 6.63e-02 9.46e-02 0.00e+00 6.52e-02 ]
C [ -6.36e-04 -1.19e-03 -2.25e-04 -5.18e-05 3.50e-05 7.57e-03 1.48e-03 3.74e-06 6.05e-02 -8.43e-05 ]
G [ -7.44e-04 7.20e-03 -7.59e-04 5.69e-02 -4.17e-07 9.54e-06 -6.97e-06 -9.42e-06 -2.67e-05 -4.28e-05 ]
T [ 1.61e-02 -1.13e-03 1.40e-02 1.03e-04 8.57e-02 -2.44e-05 -4.95e-05 -7.19e-06 1.39e-02 -2.82e-04 ]

Frequency matrix

A [ 33467 37989 33918 14868 522 65485 77056 86377 439 77953 ]
C [ 10271 13310 2713 1995 866 20523 9761 248 62379 2043 ]
G [ 7085 23789 18053 63892 65 281 269 699 1008 2240 ]
T [ 37050 12785 33189 7118 86420 1584 787 549 24046 5636 ]

5 profiles found for the same TF (FOXA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000298.1 FOXA2 ENCSR066EBK HepG2 Homo sapiens
BP000704.1 FOXA2 ENCSR310NYI liver Homo sapiens
BP000787.1 FOXA2 ENCSR080XEY liver Homo sapiens
BP001055.1 FOXA2 ENCSR490AMH HepG2 Homo sapiens
BP001115.1 FOXA2 ENCSR000BRE A549 Homo sapiens
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