This page shows detailed deep learning-derived predictions and motifs for CTCF in LNCaP clone FGC using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.
Model details
| Name: | CTCF |
| Model ID: | BP000910.1 |
| Cell line/tissue: | LNCaP clone FGC |
| Class: | C2H2 zinc finger factors |
| Family: | More than 3 adjacent zinc fingers |
| Best Match(es): | MA0139.2 |
| Taxon: | Vertebrates |
| Species: | Homo sapiens |
| Data Type: | ChIP-seq |
| Uniprot ID: | P49711 |
| Source: | ENCSR000DME |
| Model: | BPNet |
| A [ | -2.66e-03 | -1.39e-03 | 2.78e-02 | -2.15e-03 | -5.37e-03 | 8.66e-02 | -5.57e-04 | 2.27e-02 | -5.96e-03 | -1.02e-03 | -1.89e-03 | -3.70e-03 | 1.12e-02 | -3.84e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 9.22e-02 | 1.94e-01 | -3.36e-04 | 6.29e-02 | 1.38e-02 | -4.21e-04 | -1.45e-04 | -3.02e-04 | -3.11e-04 | -5.36e-05 | 5.32e-04 | 1.10e-01 | -1.67e-04 | 4.19e-02 | ] |
| G [ | -2.26e-03 | -5.51e-04 | 7.94e-03 | 1.49e-02 | -2.09e-03 | 7.21e-04 | 2.10e-01 | 8.28e-02 | 5.80e-02 | 1.91e-01 | 1.26e-01 | -6.91e-04 | 6.31e-02 | 1.23e-02 | ] |
| T [ | -3.14e-03 | -1.03e-03 | -5.99e-03 | -2.68e-03 | 2.40e-02 | -2.92e-03 | -4.36e-04 | -7.78e-04 | 1.15e-02 | -6.99e-04 | -3.79e-04 | -3.87e-03 | -4.24e-03 | -1.49e-03 | ] |
| A [ | 4854 | 37 | 33263 | 2910 | 7959 | 39182 | 276 | 19371 | 3069 | 787 | 1526 | 7427 | 20409 | 4902 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 35992 | 47191 | 1675 | 25936 | 17660 | 1085 | 61 | 327 | 1517 | 211 | 2175 | 33722 | 2684 | 22768 | ] |
| G [ | 2846 | 11 | 5225 | 16741 | 3660 | 3894 | 46775 | 27043 | 24598 | 45607 | 39107 | 1665 | 21459 | 14198 | ] |
| T [ | 3559 | 12 | 7088 | 1664 | 17972 | 3089 | 139 | 511 | 18067 | 646 | 4444 | 4437 | 2700 | 5383 | ] |