Detailed information of deep learning profile BP000957.1

This page shows detailed deep learning-derived predictions and motifs for HNF4A in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: HNF4A
Model ID: BP000957.1
Cell line/tissue: HepG2
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
Best Match(es): MA0114.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P41235  
Source: ENCSR000EEU
Model: BPNet

Contribution weight matrix (CWM)

A [ -3.29e-03 -5.50e-05 7.85e-03 4.35e-02 -3.28e-05 -2.47e-04 -6.01e-04 -3.93e-04 -2.87e-04 2.11e-03 8.51e-03 -1.44e-03 -2.32e-03 ]
C [ 1.99e-03 -3.87e-04 -1.29e-03 6.81e-03 1.07e-01 1.26e-03 -7.56e-04 6.62e-04 -4.10e-04 3.29e-04 3.94e-03 5.77e-02 1.09e-02 ]
G [ -1.08e-03 7.46e-02 1.97e-02 -7.46e-04 -6.39e-06 -6.76e-05 -4.06e-04 -5.13e-04 7.44e-02 8.07e-03 -1.37e-03 -8.14e-04 -4.24e-04 ]
T [ 2.93e-02 -3.05e-04 -1.16e-03 -1.17e-03 -4.46e-05 5.43e-02 4.92e-02 6.59e-02 -2.69e-04 -2.51e-03 -1.83e-03 -1.17e-03 5.25e-03 ]

Frequency matrix

A [ 2725 2174 7860 13266 0 624 984 570 1483 6598 7227 1998 3319 ]
C [ 2489 386 3003 6311 22340 3003 4549 1086 545 5186 7341 16875 8405 ]
G [ 2061 19278 9856 812 0 155 946 689 19959 6756 3052 938 1546 ]
T [ 15066 502 1621 1950 0 18558 15861 19995 353 3801 4721 2529 9070 ]

4 profiles found for the same TF (HNF4A) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000363.1 HNF4A ENCSR601OGE liver Homo sapiens
BP000425.1 HNF4A ENCSR469FBY HepG2 Homo sapiens
BP000577.1 HNF4A ENCSR445QRF liver Homo sapiens
BP001100.1 HNF4A ENCSR000BLF HepG2 Homo sapiens
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