Detailed information of deep learning profile BP000958.1

This page shows detailed deep learning-derived predictions and motifs for FOXA1 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000958.1
Cell line/tissue: liver
Class: Fork head/winged helix factors
Family: FOX
Best Match(es): MA0148.4 MA0148.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR735KEY
Model: BPNet

Contribution weight matrix (CWM)

A [ 3.59e-03 6.45e-03 2.93e-03 1.04e-03 -9.26e-06 2.40e-02 3.41e-02 4.22e-02 1.16e-06 2.94e-02 ]
C [ -1.29e-04 -5.14e-04 -5.72e-05 -7.50e-06 2.05e-04 6.14e-03 1.10e-03 1.04e-05 2.54e-02 -3.24e-05 ]
G [ -4.52e-04 2.86e-03 5.28e-04 2.95e-02 1.18e-06 9.35e-06 8.15e-06 -5.48e-06 -6.69e-06 -5.31e-06 ]
T [ 5.95e-03 -1.01e-03 3.27e-03 2.36e-06 4.06e-02 1.85e-06 -1.97e-05 -1.09e-05 9.59e-03 -1.32e-04 ]

Frequency matrix

A [ 8010 9019 8865 3727 30 14223 19073 20606 303 18630 ]
C [ 2555 3169 395 230 230 6082 1637 62 13450 480 ]
G [ 1660 5488 4382 16253 49 190 108 44 143 420 ]
T [ 8646 3195 7230 661 20562 376 53 159 6975 1341 ]

Alternative motif patterns (AMPs)

11 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP001104.1 FOXA1 ENCSR865RXA HepG2 Homo sapiens
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