Detailed information of deep learning profile BP000958.1

This page shows detailed deep learning-derived predictions and motifs for FOXA1 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000958.1
Cell line/tissue: liver
Class: Fork head/winged helix factors
Family: FOX
Best Match(es): MA0148.4 MA0148.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR735KEY
Model: BPNet

Contribution weight matrix (CWM)

A [ -1.32e-04 9.59e-03 -1.09e-05 -1.97e-05 1.85e-06 4.06e-02 2.36e-06 3.27e-03 -1.01e-03 5.95e-03 ]
C [ -5.31e-06 -6.69e-06 -5.48e-06 8.15e-06 9.35e-06 1.18e-06 2.95e-02 5.28e-04 2.86e-03 -4.52e-04 ]
G [ -3.24e-05 2.54e-02 1.04e-05 1.10e-03 6.14e-03 2.05e-04 -7.50e-06 -5.72e-05 -5.14e-04 -1.29e-04 ]
T [ 2.94e-02 1.16e-06 4.22e-02 3.41e-02 2.40e-02 -9.26e-06 1.04e-03 2.93e-03 6.45e-03 3.59e-03 ]

Frequency matrix

A [ 1341 6975 159 53 376 20562 661 7230 3195 8646 ]
C [ 420 143 44 108 190 49 16253 4382 5488 1660 ]
G [ 480 13450 62 1637 6082 230 230 395 3169 2555 ]
T [ 18630 303 20606 19073 14223 30 3727 8865 9019 8010 ]

Alternative motif patterns (AMPs)

11 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000233.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens
BP000287.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens
BP000429.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens
BP000465.1 FOXA1 ENCSR324RCI liver Homo sapiens
BP000621.1 FOXA1 ENCSR000BKY T47D Homo sapiens
BP000807.1 FOXA1 ENCSR000BRD A549 Homo sapiens
BP000816.1 FOXA1 ENCSR819LHG K562 Homo sapiens
BP000880.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens
BP001033.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens
BP001046.1 FOXA1 ENCSR000BPX A549 Homo sapiens
Showing 10 profiles of page 1 from 2 pages