Detailed information of deep learning profile BP000994.1

This page shows detailed deep learning-derived predictions and motifs for RFX1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RFX1
Model ID: BP000994.1
Cell line/tissue: K562
Class: Fork head/winged helix factors
Family: RFX-related factors
Best Match(es): MA0509.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P48743  
Source: ENCSR041AXL
Model: BPNet

Contribution weight matrix (CWM)

A [ 3.56e-04 -4.76e-05 6.68e-04 3.96e-03 -4.58e-05 -2.30e-05 6.99e-02 8.42e-05 2.02e-03 2.61e-03 -2.65e-03 2.66e-02 6.39e-02 -2.99e-04 ]
C [ -7.17e-06 -7.39e-05 2.22e-03 -6.51e-04 1.02e-01 7.76e-02 -1.06e-03 -7.09e-04 -4.21e-05 1.28e-04 2.04e-02 -9.56e-04 5.64e-04 5.95e-02 ]
G [ 1.20e-01 5.02e-06 -1.62e-04 5.24e-02 -5.68e-05 -3.62e-05 -7.10e-04 -7.71e-04 1.02e-01 8.89e-02 -4.32e-04 9.33e-03 -8.65e-04 -4.85e-04 ]
T [ -7.31e-06 1.12e-01 6.17e-02 -2.19e-03 3.52e-03 1.36e-02 1.11e-04 4.66e-02 -7.49e-05 -3.09e-04 5.35e-03 6.47e-04 -2.28e-03 4.24e-03 ]

Frequency matrix

A [ 306 38 1128 2070 12 24 11097 2034 746 783 3565 6435 9353 846 ]
C [ 4 160 1567 349 12609 10529 803 607 21 207 4952 809 1096 7911 ]
G [ 13200 33 104 9264 27 39 574 1860 12707 12437 1708 4240 1509 1012 ]
T [ 10 13289 10721 1837 872 2928 1046 9019 46 93 3295 2036 1562 3751 ]

Alternative motif patterns (AMPs)

4 profiles found for the same TF (RFX1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000205.1 RFX1 ENCSR968GIB K562 Homo sapiens
BP000378.1 RFX1 ENCSR066TET MCF-7 Homo sapiens
BP000828.1 RFX1 ENCSR928API HepG2 Homo sapiens
BP001028.1 RFX1 ENCSR788XNX MCF-7 Homo sapiens
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