Detailed information of deep learning profile BP000994.1

This page shows detailed deep learning-derived predictions and motifs for RFX1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RFX1
Model ID: BP000994.1
Cell line/tissue: K562
Class: Fork head/winged helix factors
Family: RFX-related factors
Best Match(es): MA0509.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P48743  
Source: ENCSR041AXL
Model: BPNet

Contribution weight matrix (CWM)

A [ 4.24e-03 -2.28e-03 6.47e-04 5.35e-03 -3.09e-04 -7.49e-05 4.66e-02 1.11e-04 1.36e-02 3.52e-03 -2.19e-03 6.17e-02 1.12e-01 -7.31e-06 ]
C [ -4.85e-04 -8.65e-04 9.33e-03 -4.32e-04 8.89e-02 1.02e-01 -7.71e-04 -7.10e-04 -3.62e-05 -5.68e-05 5.24e-02 -1.62e-04 5.02e-06 1.20e-01 ]
G [ 5.95e-02 5.64e-04 -9.56e-04 2.04e-02 1.28e-04 -4.21e-05 -7.09e-04 -1.06e-03 7.76e-02 1.02e-01 -6.51e-04 2.22e-03 -7.39e-05 -7.17e-06 ]
T [ -2.99e-04 6.39e-02 2.66e-02 -2.65e-03 2.61e-03 2.02e-03 8.42e-05 6.99e-02 -2.30e-05 -4.58e-05 3.96e-03 6.68e-04 -4.76e-05 3.56e-04 ]

Frequency matrix

A [ 3751 1562 2036 3295 93 46 9019 1046 2928 872 1837 10721 13289 10 ]
C [ 1012 1509 4240 1708 12437 12707 1860 574 39 27 9264 104 33 13200 ]
G [ 7911 1096 809 4952 207 21 607 803 10529 12609 349 1567 160 4 ]
T [ 846 9353 6435 3565 783 746 2034 11097 24 12 2070 1128 38 306 ]

Alternative motif patterns (AMPs)

4 profiles found for the same TF (RFX1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000205.1 RFX1 ENCSR968GIB K562 Homo sapiens
BP000378.1 RFX1 ENCSR066TET MCF-7 Homo sapiens
BP000828.1 RFX1 ENCSR928API HepG2 Homo sapiens
BP001028.1 RFX1 ENCSR788XNX MCF-7 Homo sapiens
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