Detailed information of deep learning profile BP001046.1

This page shows detailed deep learning-derived predictions and motifs for FOXA1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP001046.1
Cell line/tissue: A549
Class: Fork head/winged helix factors
Family: FOX
Best Match(es): MA0148.4 MA0148.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR000BPX
Model: BPNet

Contribution weight matrix (CWM)

A [ 1.97e-03 3.83e-03 2.21e-03 6.80e-04 6.61e-06 1.93e-02 1.79e-02 3.26e-02 0.00e+00 2.31e-02 ]
C [ -2.13e-04 -4.21e-04 -5.08e-05 -1.14e-05 -2.25e-06 1.32e-03 5.48e-05 0.00e+00 3.01e-02 -3.30e-05 ]
G [ -3.30e-04 1.58e-03 -8.49e-04 2.04e-02 2.95e-06 2.40e-05 -2.24e-05 -1.27e-06 0.00e+00 -1.74e-05 ]
T [ 4.56e-03 -5.27e-04 3.11e-03 -5.28e-05 2.79e-02 -1.61e-06 -3.13e-05 4.27e-06 8.89e-06 -1.40e-04 ]

Frequency matrix

A [ 4220 4728 4567 2320 274 7457 9421 10577 0 9958 ]
C [ 1230 1816 417 209 521 2158 510 13 10678 67 ]
G [ 900 2357 1713 7376 194 586 343 49 1 100 ]
T [ 4332 1781 3985 777 9693 481 408 43 3 557 ]

11 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000233.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens
BP000287.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens
BP000429.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens
BP000465.1 FOXA1 ENCSR324RCI liver Homo sapiens
BP000621.1 FOXA1 ENCSR000BKY T47D Homo sapiens
BP000807.1 FOXA1 ENCSR000BRD A549 Homo sapiens
BP000816.1 FOXA1 ENCSR819LHG K562 Homo sapiens
BP000880.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens
BP000958.1 FOXA1 ENCSR735KEY liver Homo sapiens
BP001033.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens
Showing 10 profiles of page 1 from 2 pages