Detailed information of deep learning profile BP001055.1

This page shows detailed deep learning-derived predictions and motifs for FOXA2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA2
Model ID: BP001055.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
Best Match(es): MA0047.3 MA0032.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9Y261  
Source: ENCSR490AMH
Model: BPNet

Contribution weight matrix (CWM)

A [ 4.97e-03 8.94e-03 7.80e-03 4.41e-03 -5.16e-05 5.92e-02 5.51e-02 6.08e-02 -2.37e-06 4.13e-02 ]
C [ 1.88e-05 -6.42e-05 -1.25e-05 -1.72e-04 3.49e-02 4.01e-05 2.20e-05 -4.16e-07 4.71e-02 -3.13e-07 ]
G [ -1.78e-04 7.66e-03 4.52e-04 1.84e-02 1.43e-06 1.54e-06 2.49e-06 5.02e-06 2.72e-05 1.13e-05 ]
T [ 9.43e-03 -6.42e-04 2.12e-03 -1.92e-04 4.91e-04 -4.51e-06 1.80e-06 7.68e-06 4.45e-03 -8.88e-05 ]

Frequency matrix

A [ 20288 21480 21284 18066 3714 48687 47984 48969 972 45809 ]
C [ 5822 7056 4658 4310 41275 356 1119 11 37543 728 ]
G [ 4421 13800 10864 19518 1050 10 13 46 1348 941 ]
T [ 18609 6804 12334 7246 3102 87 24 114 9278 1662 ]

5 profiles found for the same TF (FOXA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000298.1 FOXA2 ENCSR066EBK HepG2 Homo sapiens
BP000704.1 FOXA2 ENCSR310NYI liver Homo sapiens
BP000787.1 FOXA2 ENCSR080XEY liver Homo sapiens
BP000906.1 FOXA2 ENCSR000BNI HepG2 Homo sapiens
BP001115.1 FOXA2 ENCSR000BRE A549 Homo sapiens
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