Detailed information of deep learning profile BP001057.1

This page shows detailed deep learning-derived predictions and motifs for PBX2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PBX2
Model ID: BP001057.1
Cell line/tissue: K562
Class: Homeo domain factors
Family: TALE-type homeo domain factors
Best Match(es): MA1113.1 MA1113.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P40425  
Source: ENCSR633EIC
Model: BPNet

Contribution weight matrix (CWM)

A [ 1.35e-03 -3.04e-04 -1.28e-04 -5.90e-05 1.46e-05 4.41e-05 -2.59e-05 1.22e-02 7.89e-05 -3.35e-04 7.41e-06 ]
C [ 4.43e-04 1.81e-03 9.81e-03 1.42e-04 0.00e+00 3.76e-05 2.65e-02 1.25e-04 1.43e-03 1.24e-03 6.74e-03 ]
G [ 3.14e-03 1.87e-03 9.61e-05 1.82e-04 2.36e-02 0.00e+00 0.00e+00 1.66e-04 2.51e-03 4.68e-04 5.76e-04 ]
T [ -5.11e-04 4.07e-04 -2.50e-04 8.57e-03 0.00e+00 1.36e-02 -1.35e-04 -7.45e-05 4.43e-05 4.91e-03 -2.30e-04 ]

Frequency matrix

A [ 1766 881 658 503 16 937 1 4783 993 946 1207 ]
C [ 1288 1896 4196 483 5 473 5882 542 1855 1484 2264 ]
G [ 1674 1678 524 286 5860 305 0 262 1801 1077 1099 ]
T [ 1154 1428 505 4611 2 4168 0 296 1234 2376 1313 ]

2 profiles found for the same TF (PBX2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000270.1 PBX2 ENCSR849DFF HepG2 Homo sapiens
BP000665.1 PBX2 ENCSR263DFP K562 Homo sapiens
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