Detailed information of deep learning profile BP001098.1

This page shows detailed deep learning-derived predictions and motifs for THRA in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: THRA
Model ID: BP001098.1
Cell line/tissue: K562
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Best Match(es): MA1969.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P10827  
Source: ENCSR264CZJ
Model: BPNet

Contribution weight matrix (CWM)

A [ -7.08e-04 -2.33e-04 1.03e-02 -1.87e-04 -1.76e-05 -1.27e-04 -9.00e-04 2.60e-02 1.55e-03 3.91e-03 -4.02e-04 -1.57e-04 3.21e-02 1.22e-03 -3.79e-04 -3.21e-04 ]
C [ 4.95e-04 -7.04e-04 -7.75e-04 5.53e-02 4.89e-02 3.08e-03 7.04e-03 -7.65e-04 -8.29e-04 -1.67e-03 1.36e-03 -1.20e-03 1.16e-04 3.19e-02 3.93e-02 9.39e-03 ]
G [ -4.40e-04 3.10e-02 -6.87e-04 1.02e-05 5.87e-05 1.43e-05 -6.63e-04 3.25e-03 -1.47e-04 1.91e-04 -5.81e-04 3.15e-02 -9.80e-05 1.11e-05 3.55e-05 -1.57e-04 ]
T [ 2.58e-02 -4.24e-04 6.64e-03 -6.43e-05 -4.84e-05 2.98e-02 1.56e-03 -3.61e-04 -3.11e-05 9.00e-05 2.80e-02 -2.23e-04 -4.00e-04 -2.42e-03 -8.15e-04 1.28e-02 ]

Frequency matrix

A [ 107 142 850 37 17 7 145 1305 481 542 125 280 1288 216 49 43 ]
C [ 157 122 85 1696 1716 370 947 54 292 293 210 119 218 1238 1580 782 ]
G [ 59 1393 235 7 5 18 278 320 603 574 50 1266 204 31 16 31 ]
T [ 1428 94 581 11 13 1356 381 72 375 342 1366 86 41 266 106 895 ]

1 profiles found for the same TF (THRA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000970.1 THRA ENCSR551QJT HepG2 Homo sapiens
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