Detailed information of deep learning profile BP001104.1

This page shows detailed deep learning-derived predictions and motifs for FOXA1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP001104.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
Best Match(es): MA0148.4 MA0148.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR865RXA
Model: BPNet

Contribution weight matrix (CWM)

A [ 4.95e-03 1.09e-02 3.69e-03 6.34e-04 -2.64e-06 4.72e-02 5.92e-02 7.94e-02 9.48e-07 5.81e-02 ]
C [ -4.91e-04 -7.07e-04 -1.23e-04 -1.34e-05 1.51e-05 8.35e-03 2.56e-03 3.23e-06 5.78e-02 -4.76e-05 ]
G [ -7.99e-04 6.63e-03 -5.09e-04 5.61e-02 6.25e-06 1.85e-05 -2.13e-06 -8.38e-06 -4.22e-06 7.93e-07 ]
T [ 1.47e-02 -1.15e-03 1.14e-02 9.30e-05 7.57e-02 -5.10e-07 -2.80e-05 -5.12e-06 9.64e-03 -2.97e-04 ]

Frequency matrix

A [ 17146 19365 16699 5520 434 33256 40684 45753 133 41529 ]
C [ 5715 7697 1630 711 591 12451 5861 249 36078 1217 ]
G [ 4467 13310 10100 37980 301 263 121 447 314 1118 ]
T [ 19550 6506 18450 2667 45552 908 212 429 10353 3013 ]

Alternative motif patterns (AMPs)

11 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000233.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens
BP000287.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens
BP000429.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens
BP000465.1 FOXA1 ENCSR324RCI liver Homo sapiens
BP000621.1 FOXA1 ENCSR000BKY T47D Homo sapiens
BP000807.1 FOXA1 ENCSR000BRD A549 Homo sapiens
BP000816.1 FOXA1 ENCSR819LHG K562 Homo sapiens
BP000880.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens
BP000958.1 FOXA1 ENCSR735KEY liver Homo sapiens
BP001033.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens
Showing 10 profiles of page 1 from 2 pages