Detailed information of deep learning profile BP001104.1

This page shows detailed deep learning-derived predictions and motifs for FOXA1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP001104.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
Best Match(es): MA0148.4 MA0148.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR865RXA
Model: BPNet

Contribution weight matrix (CWM)

A [ 4.95e-03 1.09e-02 3.69e-03 6.34e-04 -2.64e-06 4.72e-02 5.92e-02 7.94e-02 9.48e-07 5.81e-02 ]
C [ -4.91e-04 -7.07e-04 -1.23e-04 -1.34e-05 1.51e-05 8.35e-03 2.56e-03 3.23e-06 5.78e-02 -4.76e-05 ]
G [ -7.99e-04 6.63e-03 -5.09e-04 5.61e-02 6.25e-06 1.85e-05 -2.13e-06 -8.38e-06 -4.22e-06 7.93e-07 ]
T [ 1.47e-02 -1.15e-03 1.14e-02 9.30e-05 7.57e-02 -5.10e-07 -2.80e-05 -5.12e-06 9.64e-03 -2.97e-04 ]

Frequency matrix

A [ 17146 19365 16699 5520 434 33256 40684 45753 133 41529 ]
C [ 5715 7697 1630 711 591 12451 5861 249 36078 1217 ]
G [ 4467 13310 10100 37980 301 263 121 447 314 1118 ]
T [ 19550 6506 18450 2667 45552 908 212 429 10353 3013 ]

Alternative motif patterns (AMPs)

11 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP001046.1 FOXA1 ENCSR000BPX A549 Homo sapiens
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