Detailed information of deep learning profile BP001104.1

This page shows detailed deep learning-derived predictions and motifs for FOXA1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP001104.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
Best Match(es): MA0148.4 MA0148.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR865RXA
Model: BPNet

Contribution weight matrix (CWM)

A [ -2.97e-04 9.64e-03 -5.12e-06 -2.80e-05 -5.10e-07 7.57e-02 9.30e-05 1.14e-02 -1.15e-03 1.47e-02 ]
C [ 7.93e-07 -4.22e-06 -8.38e-06 -2.13e-06 1.85e-05 6.25e-06 5.61e-02 -5.09e-04 6.63e-03 -7.99e-04 ]
G [ -4.76e-05 5.78e-02 3.23e-06 2.56e-03 8.35e-03 1.51e-05 -1.34e-05 -1.23e-04 -7.07e-04 -4.91e-04 ]
T [ 5.81e-02 9.48e-07 7.94e-02 5.92e-02 4.72e-02 -2.64e-06 6.34e-04 3.69e-03 1.09e-02 4.95e-03 ]

Frequency matrix

A [ 3013 10353 429 212 908 45552 2667 18450 6506 19550 ]
C [ 1118 314 447 121 263 301 37980 10100 13310 4467 ]
G [ 1217 36078 249 5861 12451 591 711 1630 7697 5715 ]
T [ 41529 133 45753 40684 33256 434 5520 16699 19365 17146 ]

Alternative motif patterns (AMPs)

11 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000233.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens
BP000287.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens
BP000429.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens
BP000465.1 FOXA1 ENCSR324RCI liver Homo sapiens
BP000621.1 FOXA1 ENCSR000BKY T47D Homo sapiens
BP000807.1 FOXA1 ENCSR000BRD A549 Homo sapiens
BP000816.1 FOXA1 ENCSR819LHG K562 Homo sapiens
BP000880.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens
BP000958.1 FOXA1 ENCSR735KEY liver Homo sapiens
BP001033.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens
Showing 10 profiles of page 1 from 2 pages