Detailed information of deep learning profile BP001107.1

This page shows detailed deep learning-derived predictions and motifs for GATA3 in T47D using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GATA3
Model ID: BP001107.1
Cell line/tissue: T47D
Class: Other C4 zinc finger-type factors
Family: C4-GATA-related
Best Match(es): MA0037.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P23772  
Source: ENCSR000BMX
Model: BPNet

Contribution weight matrix (CWM)

A [ 4.47e-03 6.98e-03 7.12e-03 -3.96e-04 4.15e-04 1.66e-04 7.54e-04 7.46e-02 0.00e+00 0.00e+00 2.38e-04 -2.34e-06 4.35e-05 4.67e-03 9.03e-04 8.84e-04 3.40e-03 2.54e-03 6.13e-03 7.80e-03 2.25e-02 8.48e-03 4.74e-03 3.84e-03 ]
C [ 9.64e-04 7.29e-04 9.85e-04 -1.86e-04 3.47e-03 5.02e-04 -2.15e-04 0.00e+00 0.00e+00 6.68e-02 0.00e+00 6.82e-04 5.38e-04 9.50e-04 1.14e-03 1.08e-03 2.53e-04 1.89e-03 2.85e-03 3.75e-03 -2.16e-04 1.73e-04 1.19e-02 4.61e-03 ]
G [ 8.28e-03 6.91e-03 8.30e-04 1.04e-03 1.39e-03 -2.44e-04 1.17e-03 0.00e+00 0.00e+00 0.00e+00 2.12e-04 1.33e-03 3.12e-03 5.45e-04 1.34e-03 4.99e-04 3.29e-03 4.34e-03 1.33e-03 8.48e-04 2.56e-04 1.24e-03 1.06e-03 8.10e-04 ]
T [ 7.91e-04 3.36e-03 8.06e-03 9.71e-03 -5.86e-04 1.66e-02 1.65e-02 0.00e+00 6.44e-02 0.00e+00 1.65e-02 1.11e-03 7.26e-04 5.26e-04 4.80e-03 3.16e-03 7.85e-04 9.89e-04 2.22e-03 2.17e-03 -1.77e-04 1.31e-02 5.89e-03 5.43e-03 ]

Frequency matrix

A [ 4994 5471 5724 3352 4744 3917 4544 19572 0 0 2485 3072 4461 6149 4611 5418 5208 5080 5586 6073 6231 5671 4951 5366 ]
C [ 4277 4200 4007 5008 6092 3355 2417 0 0 19565 195 5766 4683 4694 5409 4606 4229 5090 4833 4465 3973 4379 5080 4711 ]
G [ 4781 4993 2979 3175 3758 1997 4415 0 0 2 567 5475 4021 4410 3732 3729 4138 4055 3863 3610 3634 3445 3505 3861 ]
T [ 5520 4907 6862 8037 4978 10304 8195 0 19572 5 16325 5260 6408 4319 5820 5819 5997 5348 5290 5423 5734 6077 6036 5634 ]

Alternative motif patterns (AMPs)

3 profiles found for the same TF (GATA3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000419.1 GATA3 ENCSR000BTH SK-N-SH Homo sapiens
BP000597.1 GATA3 ENCSR423RTK MCF-7 Homo sapiens
BP000827.1 GATA3 ENCSR000BST MCF-7 Homo sapiens
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